ybx2-a (Xenopus laevis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 AAI69706 T17424_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M250_0.6		 Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		(Direct)
ybx2-a
M254_0.6		 Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		(Direct)
ybx2-a
M260_0.6		 Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.958
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.931
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.931
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI69706 CSD 41 111

Links

Other CSD family RBPs
Other Xenopus laevis RBPs

203 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Minc12652 Meloidogyne incognita Minc12652 I 0.708
ISCW005281 Ixodes scapularis ISCW005281 I 0.792
GE20150 Drosophila yakuba FBgn0237472 I 0.778
GK16710 Drosophila willistoni FBgn0218712 I 0.792
GJ14010 Drosophila virilis FBgn0201228 I 0.792
GD12750 Drosophila simulans FBgn0184477 I 0.778
GM24682 Drosophila sechellia FBgn0179545 I 0.778
GH16919 Drosophila grimshawi FBgn0124390 I 0.792
yps Drosophila melanogaster FBgn0022959 I 0.778
cey-1 Caenorhabditis elegans F33A8.3 I 0.722
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.704
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.753
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.704
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.764
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.764
133388 Helobdella robusta 133388 I 0.750
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.764
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.708
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.750
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.750
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.750
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.778
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.722
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.736
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.764
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.764
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.750
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.722
146547 Helobdella robusta 146547 I 0.722
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.764
Bm1_57515 Brugia malayi Bm1_57515 I 0.764
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.726
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.750
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.764
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.764
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.781
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.778
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.778
CRE01789 Caenorhabditis remanei CRE01789 I 0.722
CBN16711 Caenorhabditis brenneri CBN16711 I 0.722
CBG02981 Caenorhabditis briggsae CBG02981 I 0.708
AGAP006108 Anopheles gambiae AGAP006108 I 0.750
AAEL001375 Aedes aegypti AAEL001375 I 0.750
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.764
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.753
YBX2 Echinops telfairi ENSETEG00000014271 I 0.753
YBX1 Sorex araneus ENSSARG00000012628 I 0.750
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.722
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.764
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.789
YBX2 Oryzias latipes ENSORLG00000018683 I 0.736
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.778
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.778
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.704
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.764
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.778
YBX2 Microcebus murinus ENSMICG00000012453 I 0.704
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.736
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.730
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.718
ENSPPYG00000000582 Pongo pygmaeus ENSPPYG00000000582 N 0.000
UHMK1 Procavia capensis ENSPCAG00000000531 N 0.000
UHMK1 Oryzias latipes ENSORLG00000014340 N 0.000
UHMK1 Ochotona princeps ENSOPRG00000001881 N 0.000
UHMK1 Otolemur garnettii ENSOGAG00000016110 N 0.000
D9ZBB1_RABIT Oryctolagus cuniculus ENSOCUG00000012411 N 0.000
Uhmk1 Mus musculus ENSMUSG00000026667 N 0.000
UHMK1 Pan troglodytes ENSPTRG00000001601 N 0.000
UHMK1 Pteropus vampyrus ENSPVAG00000002624 N 0.000
Uhmk1 Rattus norvegicus ENSRNOG00000002941 N 0.000
UHMK1 Spermophilus tridecemlineatus ENSSTOG00000004265 N 0.000
UHMK1 Tupaia belangeri ENSTBEG00000017334 N 0.000
UHMK1 Taeniopygia guttata ENSTGUG00000017148 N 0.000
UHMK1 Tarsius syrichta ENSTSYG00000011273 N 0.000
UHMK1 Vicugna pacos ENSVPAG00000010726 N 0.000
Ame_R008231 Ailuropoda melanoleuca Ame_R008231 N 0.000
XM_001363163.1 Monodelphis domestica ENSMODG00000001048 N 0.000
UHMK1 Macaca mulatta ENSMMUG00000019513 N 0.000
UHMK1 Choloepus hoffmanni ENSCHOG00000011101 N 0.000
UHMK1 Callithrix jacchus ENSCJAG00000004291 N 0.000
UHMK1 Cavia porcellus ENSCPOG00000004561 N 0.000
uhmk1 Danio rerio ENSDARG00000059575 N 0.000
UHMK1 Dasypus novemcinctus ENSDNOG00000009922 N 0.000
Uhmk1 Dipodomys ordii ENSDORG00000011233 N 0.000
LOC100058796 Equus caballus ENSECAG00000008744 N 0.000
UHMK1 Erinaceus europaeus ENSEEUG00000011231 N 0.000
UHMK1 Felis catus ENSFCAG00000014123 N 0.000
UHMK1 Homo sapiens ENSG00000152332 N 0.000
UHMK1 Gasterosteus aculeatus ENSGACG00000003529 N 0.000
UHMK1 Gallus gallus ENSGALG00000002734 N 0.000
UHMK1 Gorilla gorilla ENSGGOG00000002032 N 0.000
UHMK1 Loxodonta africana ENSLAFG00000007405 N 0.000
UHMK1 Meleagris gallopavo ENSMGAG00000005043 N 0.000
UHMK1 Bos taurus ENSBTAG00000012694 N 0.000