LOC100402973 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000009971 T35573_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.767
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.767
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000018343 RRM 4 66
ENSCJAP00000018343 RRM 106 171
ENSCJAP00000018352 RRM 4 66
ENSCJAP00000018352 RRM 106 171
ENSCJAP00000018355 RRM 4 66
ENSCJAP00000018355 RRM 106 171

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ZCRB1 Homo sapiens ENSG00000139168 D 0.000
ZCRB1 Anolis carolinensis ENSACAG00000003172 I 0.000
ZCRB1 Procavia capensis ENSPCAG00000011749 I 0.000
ENSPPYG00000004422 Pongo pygmaeus ENSPPYG00000004422 I 0.000
ZCRB1 Pan troglodytes ENSPTRG00000004838 I 0.000
Zcrb1 Rattus norvegicus ENSRNOG00000004996 I 0.000
ZCRB1 Taeniopygia guttata ENSTGUG00000005829 I 0.000
ZCRB1 Tetraodon nigroviridis ENSTNIG00000018504 I 0.000
ZCRB1 Takifugu rubripes ENSTRUG00000016764 I 0.000
ZCRB1 Tursiops truncatus ENSTTRG00000001378 I 0.000
ZCRB1 Vicugna pacos ENSVPAG00000012040 I 0.000
zcrb1 Xenopus tropicalis ENSXETG00000006796 I 0.000
e_gw1.93.90.1 Lottia gigantea e_gw1.93.90.1 I 0.000
estExt_fgenesh2_pg.C_670012 Branchiostoma floridae estExt_fgenesh2_pg.C_670012 I 0.000
estExt_GenewiseH_1.C_3120062 Branchiostoma floridae estExt_GenewiseH_1.C_3120062 I 0.000
Ame_R009995 Ailuropoda melanoleuca Ame_R009995 I 0.000
AAH75189 Xenopus laevis AAH75189 I 0.000
ZCRB1 Oryzias latipes ENSORLG00000013088 I 0.000
ENSOCUG00000026539 Oryctolagus cuniculus ENSOCUG00000026539 I 0.000
ZCRB1_BOVIN Bos taurus ENSBTAG00000019119 I 0.000
ZCRB1 Canis familiaris ENSCAFG00000009788 I 0.000
LOC100410115 Callithrix jacchus ENSCJAG00000017749 I 0.000
ZCRB1 Cavia porcellus ENSCPOG00000014554 I 0.000
zcrb1 Danio rerio ENSDARG00000045691 I 0.000
LOC100049989 Equus caballus ENSECAG00000012174 I 0.000
ZCRB1 Gasterosteus aculeatus ENSGACG00000018860 I 0.000
ZCRB1 Gallus gallus ENSGALG00000009544 I 0.000
ZCRB1 Gorilla gorilla ENSGGOG00000015647 I 0.000
ZCRB1 Loxodonta africana ENSLAFG00000008847 I 0.000
ZCRB1 Meleagris gallopavo ENSMGAG00000009450 I 0.000
XM_001371517.1 Monodelphis domestica ENSMODG00000006493 I 0.000
ENSMODG00000008893 Monodelphis domestica ENSMODG00000008893 I 0.000
Zcrb1 Mus musculus ENSMUSG00000022635 I 0.000
ZCRB1 Ornithorhynchus anatinus ENSOANG00000009891 I 0.000
Q6DJI9 Xenopus laevis Q6DJI9 I 0.000