Srsf4 (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000002459 T36420_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.767
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.767
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000002310 RRM 4 66
ENSDORP00000002310 RRM 106 171

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPC Homo sapiens ENSG00000092199 D 0.000
RALY Homo sapiens ENSG00000125970 D 0.000
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.000
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.000
RALYL Pan troglodytes ENSPTRG00000020381 I 0.000
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.000
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.000
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.000
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.000
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.000
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.000
Raly Rattus norvegicus ENSRNOG00000017405 I 0.000
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.000
RALYL Sorex araneus ENSSARG00000002374 I 0.000
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.000
HNRNPC Sorex araneus ENSSARG00000003711 I 0.000
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.000
RALY Pan troglodytes ENSPTRG00000013410 I 0.000
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.000
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.000
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.000
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.000
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.000
RALY Ochotona princeps ENSOPRG00000008423 I 0.000
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.000
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.000
RALYL Oryzias latipes ENSORLG00000012719 I 0.000
RALYL Oryzias latipes ENSORLG00000017934 I 0.000
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.000
RALY Procavia capensis ENSPCAG00000016867 I 0.000
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.000
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.000
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.000
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.000
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.000
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.000
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.000
RALY Vicugna pacos ENSVPAG00000000373 I 0.000
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.000
RALYL Vicugna pacos ENSVPAG00000008501 I 0.000
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.000
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.000
raly Xenopus tropicalis ENSXETG00000019514 I 0.000
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.000
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.000
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.000
AAA60937 Xenopus laevis AAA60937 I 0.000
AAH41534 Xenopus laevis AAH41534 I 0.000
AAH71084 Xenopus laevis AAH71084 I 0.000
RALY Tursiops truncatus ENSTTRG00000006590 I 0.000
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.000
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.000
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.000
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.000
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.000
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.000
RALY Tupaia belangeri ENSTBEG00000009812 I 0.000
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.000
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.000
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.000
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.000
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.000
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.000
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.000
RALY Tarsius syrichta ENSTSYG00000002598 I 0.000
P19600 Xenopus laevis P19600 I 0.000
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.000
RALY Anolis carolinensis ENSACAG00000008983 I 0.000
zgc:55701 Danio rerio ENSDARG00000053810 I 0.000
raly Danio rerio ENSDARG00000059972 I 0.000
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.000
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.000
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.000
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.000
Raly Dipodomys ordii ENSDORG00000013400 I 0.000
LOC100054239 Equus caballus ENSECAG00000012357 I 0.000
LOC100059269 Equus caballus ENSECAG00000017645 I 0.000
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.000
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.000
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.000
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.000
zgc:55733 Danio rerio ENSDARG00000022579 I 0.000
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.000
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.000
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.000
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.000
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.000
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.000
RALY Canis familiaris ENSCAFG00000007490 I 0.000
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.000
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.000
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.000
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.000
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.000
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.000
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.000
RALY Cavia porcellus ENSCPOG00000000309 I 0.000
RALYL Echinops telfairi ENSETEG00000014028 I 0.000
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.000
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.000
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.000
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.000
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.000
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.000
RALY Macaca mulatta ENSMMUG00000018093 I 0.000
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.000
RALYL Macaca mulatta ENSMMUG00000031878 I 0.000
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.000
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.000
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.000
Raly Mus musculus ENSMUSG00000027593 I 0.000
Ralyl Mus musculus ENSMUSG00000039717 I 0.000
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.000
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.000
RALY Myotis lucifugus ENSMLUG00000005330 I 0.000
RALYL Microcebus murinus ENSMICG00000005558 I 0.000
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.000
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.000
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.000
RALY Gallus gallus ENSGALG00000002054 I 0.000
LOC770541 Gallus gallus ENSGALG00000015797 I 0.000
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.000
RALY Gorilla gorilla ENSGGOG00000022709 I 0.000
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.000
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.000
RALY Loxodonta africana ENSLAFG00000000321 I 0.000
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.000
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.000
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.000
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.000