CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Srsf4
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000002459
T36420_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.767
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.767
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000002310
RRM
4
66
VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVI
ENSDORP00000002310
RRM
106
171
LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKERKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
149 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSPATP00002080001
Paramecium tetraurelia
GSPATP00002080001
N
0.000
GSPATP00006936001
Paramecium tetraurelia
GSPATP00006936001
N
0.000
GSPATP00012866001
Paramecium tetraurelia
GSPATP00012866001
N
0.000