P51968 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 P51968 T59717_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.871
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.871
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.871
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.850
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.807
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
P51968 RRM 29 98
P51968 RRM 120 189

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

290 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.850
HNRNPA1 Homo sapiens ENSG00000135486 D 0.871
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.871
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.719
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.759
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.717
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.746
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.871
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.000
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.879
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.850
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.754
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.794
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.740
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.761
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.850
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.871
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.864
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.850
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.864
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.816
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.864
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.780
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.000
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.766
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.857
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.836
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.858
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.754
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.000
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.871
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.789
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.857
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.000
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.000
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.000
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.871
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.850
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.864
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.794
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.836
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.000
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.817
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.871
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.836
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.793
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.871
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.871
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.801
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.823
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.871
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.850
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.871
AAH45260 Xenopus laevis AAH45260 I 0.843
AAH72090 Xenopus laevis AAH72090 I 0.836
CBF67672 Xenopus laevis CBF67672 I 0.836
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.829
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.821
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.871
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.864
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.809
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.843
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.857
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.864
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.871
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.857
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.000
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.850
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.864
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.829
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.871
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.871
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.871
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.871
CBU92546 Xenopus laevis CBU92546 I 0.836
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.879
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.000
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.703
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.715
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.857
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.796
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.000
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.731
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.789
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.748
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.761
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.000
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.782
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.790
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.768
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.000
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.000
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.769
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.770
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.871
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.837
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.707
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.754
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.746
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.000
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.746
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.775
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.829
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.748
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.722
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.829
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.871
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.794
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.000
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.829
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.843
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.000
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.732
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.871
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.773
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.850
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.850
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.829
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.779
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.871
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.794
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.850
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.871
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.793
LOC100054206 Equus caballus ENSECAG00000006699 I 0.782
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.871
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.829
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.857
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.871
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.871
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.871
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.794
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.769
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.801
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.732
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.796
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.766
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.850
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.864
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.816
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.713
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.000
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.773
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.000
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.850
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.814
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.809
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.801
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.000
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.000