mgf002685m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf002685m T05610_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf002685m CCCH ZF 50 76
mgf002685m CCCH ZF 97 122
mgf002685m CCCH ZF 142 168
mgf002685m CCCH ZF 311 337
mgf002685m CCCH ZF 357 383

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.731
29726.m004014 Ricinus communis 29726.m004014 N 0.843
30128.m009030 Ricinus communis 30128.m009030 N 0.716
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.726
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.748
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.756
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.711
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.793
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.716
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.813
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.739
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.837
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.709
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.731
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.791
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.739
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.716
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.776
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.709
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.733
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.704
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.748
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.704
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.709
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.828
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.709
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.719
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.776
MDP0000207283 Malus x domestica MDP0000207283 N 0.716
MDP0000319251 Malus x domestica MDP0000319251 N 0.806
MDP0000535412 Malus x domestica MDP0000535412 N 0.799
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.784
mgf008934m Mimulus guttatus mgf008934m N 0.867
mgf026218m Mimulus guttatus mgf026218m N 0.933
PK29685.1 Cannabis sativa PK29685.1 N 0.813
ppa005056m Prunus persica ppa005056m N 0.821
ppa005229m Prunus persica ppa005229m N 0.739
ppa005813m Prunus persica ppa005813m N 0.709
SB03G009920 Sorghum bicolor Sb03g009920 N 0.704
SB03G009930 Sorghum bicolor Sb03g009930 N 0.741
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.748
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.726
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.733