CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF4
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000011052
T39133_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.767
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.767
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000013841
RRM
4
66
VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVI
ENSMODP00000013841
RRM
106
171
LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
149 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH74333
Xenopus laevis
AAH74333
N
0.000
AAI33216
Xenopus laevis
AAI33216
N
0.000
ENSMGAG00000003191
Meleagris gallopavo
ENSMGAG00000003191
N
0.000
ENSMGAG00000005091
Meleagris gallopavo
ENSMGAG00000005091
N
0.000
ENSPPYG00000011525
Pongo pygmaeus
ENSPPYG00000011525
N
0.000
ENSTNIG00000003546
Tetraodon nigroviridis
ENSTNIG00000003546
N
0.000
ENSTRUG00000017789
Takifugu rubripes
ENSTRUG00000017789
I
0.000
LOC426023
Gallus gallus
ENSGALG00000013313
N
0.000
pcbp1
Xenopus tropicalis
ENSXETG00000011483
N
0.000
PCBP2
Erinaceus europaeus
ENSEEUG00000001077
N
0.000
PCBP2
Vicugna pacos
ENSVPAG00000000406
N
0.000
PCBP3
Tarsius syrichta
ENSTSYG00000005254
N
0.000
PCBP3
Takifugu rubripes
ENSTRUG00000013604
I
0.000
PCBP3
Spermophilus tridecemlineatus
ENSSTOG00000007178
N
0.000
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.000
pcbp3
Danio rerio
ENSDARG00000054378
I
0.000
Pcbp3
Dipodomys ordii
ENSDORG00000003640
N
0.000
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.000
PCBP3
Ornithorhynchus anatinus
ENSOANG00000006265
N
0.000
PCBP3
Canis familiaris
ENSCAFG00000011907
N
0.000
PCBP4
Homo sapiens
ENSG00000090097
I
0.000
PCBP4
Takifugu rubripes
ENSTRUG00000007426
I
0.000
PHUM522820
Pediculus humanus
PHUM522820
N
0.000
zgc:110045
Danio rerio
ENSDARG00000057141
N
0.000