CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000006615
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000006615
T40485_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL6
M178_0.6
Homo sapiens
UGUGDKG
RNAcompete
Ray et al.(2013)
RNCMPT00187
0.986
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.833
BRUNOL4
M004_0.6
Homo sapiens
KGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00004
0.739
unc-75
M079_0.6
Caenorhabditis elegans
UGUUGUD
RNAcompete
Ray et al.(2013)
RNCMPT00081
0.716
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000007502
RRM
47
116
LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMN
ENSPPYP00000007502
RRM
135
200
LFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMA
ENSPPYP00000007502
RRM
345
415
LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm44335
Apis mellifera
amel4_ncbi_hmm44335
N
0.000
BGIBMGA006328
Bombyx mori
BGIBMGA006328
N
0.000
PHUM473040
Pediculus humanus
PHUM473040
N
0.000