ENSPPYG00000006615 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000006615 T40485_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.986
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.833
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.739
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000007502 RRM 47 116
ENSPPYP00000007502 RRM 135 200
ENSPPYP00000007502 RRM 345 415

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA81375 Xenopus laevis AAA81375 I 0.819
AAH46942 Xenopus laevis AAH46942 I 0.810
AAH57704 Xenopus laevis AAH57704 I 0.819
AAH72134 Xenopus laevis AAH72134 I 0.819
ACH69784 Xenopus laevis ACH69784 I 0.744
ACH69785 Xenopus laevis ACH69785 I 0.819
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.814
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.986
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.838
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.814
Bm1_27610 Brugia malayi Bm1_27610 I 0.748
BRUNOL4 Homo sapiens ENSG00000101489 D 0.744
BRUNOL5 Homo sapiens ENSG00000161082 D 0.833
BRUNOL6 Homo sapiens ENSG00000140488 D 0.986
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.986
CBG15358 Caenorhabditis briggsae CBG15358 I 0.725
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.810
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.814
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.724
Celf3 Mus musculus ENSMUSG00000028137 I 0.814
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.829
CELF3 Sus scrofa ENSSSCG00000006618 I 0.795
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.794
CELF3 Oryzias latipes ENSORLG00000010447 I 0.784
CELF3 Procavia capensis ENSPCAG00000001623 I 0.786
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.814
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.814
CELF3 Equus caballus ENSECAG00000020365 I 0.814
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.829
CELF3 Danio rerio ENSDARG00000006983 I 0.776
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.810
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.814
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.814
CELF3 Homo sapiens ENSG00000159409 I 0.814
CELF3 Canis familiaris ENSCAFG00000012794 I 0.814
celf3 Danio rerio ENSDARG00000034668 I 0.795
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.814
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.843
CELF4 Oryzias latipes ENSORLG00000008913 I 0.824
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.838
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.744
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.716
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.843
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.739
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.744
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.810
Celf4 Mus musculus ENSMUSG00000024268 I 0.838
CELF5 Oryzias latipes ENSORLG00000004600 I 0.805
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.805
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.810
celf5 Danio rerio ENSDARG00000071375 I 0.805
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.768
CELF6 Sus scrofa ENSSSCG00000001928 I 0.986
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.986
CELF6 Bos taurus ENSBTAG00000014092 I 0.986
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.799
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.875
CELF6 Felis catus ENSFCAG00000016249 I 0.986
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.990
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.972
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.805
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.976
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.865
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.768
Celf6 Mus musculus ENSMUSG00000032297 I 0.986
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.895
CRE09771 Caenorhabditis remanei CRE09771 I 0.725
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.814
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.814
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.749
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.800
HEXA Macaca mulatta ENSMMUG00000010687 I 0.990
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.744
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.981
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.810
Q91579 Xenopus laevis Q91579 I 0.819
unc-75 Caenorhabditis elegans C17D12.2 D 0.716
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.708
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.708