CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CELF3
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000012064
T42327_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.807
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000030511
RRM
1
33
LSPGCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030511
RRM
52
120
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030511
RRM
351
421
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030512
RRM
1
33
LSPGCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030512
RRM
52
120
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030512
RRM
275
345
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030513
RRM
49
117
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030513
RRM
334
404
IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
ENSTRUP00000030514
RRM
1
30
GCAFLTYCARESALIAQNALHEQKTLPGMN
ENSTRUP00000030514
RRM
58
126
LFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS
ENSTRUP00000030514
RRM
317
355
QQPQQLQQREGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
107 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002883381.1
Arabidopsis lyrata
fgenesh2_kg.3__2553__AT3G23370.1
N
0.000