Medtr3g147440 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr3g147440 T54495_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr3g147440.1 RRM 26 96
Medtr3g147440.1 RRM 114 183
Medtr3g147440.1 RRM 205 274
Medtr3g147440.1 RRM 308 377

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29801.m003152 Ricinus communis 29801.m003152 N 0.794
30170.m013847 Ricinus communis 30170.m013847 N 0.804
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.794
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.801
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.790
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.705
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.723
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.733
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.706
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.712
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.708
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.786
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.779
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.801
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.765
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.776
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.730
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.733
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.715
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.701
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.715
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.840
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.811
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.815
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.843
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.804
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.815
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.701
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.726
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.715
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.811
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.708
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.808
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.705
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.797
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.705
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.723
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.733
MDP0000156895 Malus x domestica MDP0000156895 N 0.776
MDP0000253709 Malus x domestica MDP0000253709 N 0.776
MDP0000283985 Malus x domestica MDP0000283985 N 0.776
MDP0000286821 Malus x domestica MDP0000286821 N 0.701
MDP0000497543 Malus x domestica MDP0000497543 N 0.783
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.808
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.819
mgf004596m Mimulus guttatus mgf004596m N 0.708
mgf004973m Mimulus guttatus mgf004973m N 0.772
mgf005294m Mimulus guttatus mgf005294m N 0.726
mgf009542m Mimulus guttatus mgf009542m N 0.783
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.744
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.701
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.708
PK00659.1 Cannabis sativa PK00659.1 N 0.737
PK02172.1 Cannabis sativa PK02172.1 N 0.754
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.815
ppa002607m Prunus persica ppa002607m N 0.779
ppa002618m Prunus persica ppa002618m N 0.808
ppa002620m Prunus persica ppa002620m N 0.808
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.726
SB06G021850 Sorghum bicolor Sb06g021850 N 0.712
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.762
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.705
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.754
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.705