chr6.CM0139.780.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr6.CM0139.780.nd T55911_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
chr6.CM0139.780.nd RRM 70 137
chr6.CM0139.780.nd RRM 163 234
chr6.CM0139.780.nd RRM 272 336

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29666.m001436 Ricinus communis 29666.m001436 I 0.721
29842.m003612 Ricinus communis 29842.m003612 N 0.792
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.731
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.778
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.700
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.783
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.721
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.739
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.744
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.705
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.745
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.760
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.760
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.760
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.760
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.760
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.744
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.744
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.878
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.835
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.840
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.922
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.951
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.937
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.917
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.726
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.755
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.700
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.700
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.721
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.734
MDP0000223369 Malus x domestica MDP0000223369 N 0.726
MDP0000294628 Malus x domestica MDP0000294628 I 0.854
MDP0000614064 Malus x domestica MDP0000614064 N 0.740
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.873
mgf010468m Mimulus guttatus mgf010468m I 0.769
mgf014417m Mimulus guttatus mgf014417m N 0.764
PK10695.1 Cannabis sativa PK10695.1 I 0.835
ppa006577m Prunus persica ppa006577m I 0.736
ppa006617m Prunus persica ppa006617m N 0.816
SB06G029180 Sorghum bicolor Sb06g029180 N 0.721
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.773