ybx2-a (Xenopus laevis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 AAI69706 T17424_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ybx2-a
M250_0.6		 Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		(Direct)
ybx2-a
M254_0.6		 Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		(Direct)
ybx2-a
M260_0.6		 Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.958
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.931
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.931
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAI69706 CSD 41 111

Links

Other CSD family RBPs
Other Xenopus laevis RBPs

203 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CC1G_13772 Coprinopsis cinerea CC1G_13772 N 0.000
estExt_fgenesh2_pm.C_10107 Heterobasidion annosum estExt_fgenesh2_pm.C_10107 N 0.000
gww1.1.839.1 Laccaria bicolor gww1.1.839.1 N 0.000
estExt_genemark.C_31602 Pleurotus ostreatus estExt_genemark.C_31602 N 0.000
estExt_fgenesh3_pg.C_1090054 Postia placenta estExt_fgenesh3_pg.C_1090054 N 0.000
estExt_Genewise1.C_1410078 Postia placenta estExt_Genewise1.C_1410078 N 0.000
estExt_fgenesh2_pg.C_10668 Serpula lacrymans estExt_fgenesh2_pg.C_10668 N 0.000