CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ybx2-a
(
Xenopus laevis
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
AAI69706
T17424_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ybx2-a
M250_0.6
Xenopus laevis
UAACAUC
SELEX
Cook et al.(2011)
114_7499328
(Direct)
ybx2-a
M254_0.6
Xenopus laevis
KAACAUCU
SELEX
Cook et al.(2011)
115_7499328
(Direct)
ybx2-a
M260_0.6
Xenopus laevis
GCCANACCAYCGC
SELEX
Cook et al.(2011)
130_11376140
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
YBX2
M082_0.6
Homo sapiens
AACAWCD
RNAcompete
Ray et al.(2013)
RNCMPT00084
0.958
YB-1
M111_0.6
Homo sapiens
AACAUCD
RNAcompete
Ray et al.(2013)
RNCMPT00116
0.931
YB-1
M081_0.6
Homo sapiens
AACAUC
RNAcompete
Ray et al.(2013)
RNCMPT00083
0.931
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI69706
CSD
41
111
QVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGP
Links
Other
CSD
family RBPs
Other
Xenopus laevis
RBPs
203 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_13772
Coprinopsis cinerea
CC1G_13772
N
0.000
estExt_fgenesh2_pm.C_10107
Heterobasidion annosum
estExt_fgenesh2_pm.C_10107
N
0.000
gww1.1.839.1
Laccaria bicolor
gww1.1.839.1
N
0.000
estExt_genemark.C_31602
Pleurotus ostreatus
estExt_genemark.C_31602
N
0.000
estExt_fgenesh3_pg.C_1090054
Postia placenta
estExt_fgenesh3_pg.C_1090054
N
0.000
estExt_Genewise1.C_1410078
Postia placenta
estExt_Genewise1.C_1410078
N
0.000
estExt_fgenesh2_pg.C_10668
Serpula lacrymans
estExt_fgenesh2_pg.C_10668
N
0.000