ppa002607m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa002607m T58330_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa002607m RRM 34 104
ppa002607m RRM 122 191
ppa002607m RRM 213 282
ppa002607m RRM 316 385

Links

Other RRM family RBPs
Other Prunus persica RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.786
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.772
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.783
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.712
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.790
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.712
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.769
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.733
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.765
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.741
PK02172.1 Cannabis sativa PK02172.1 N 0.879
PK00659.1 Cannabis sativa PK00659.1 N 0.779
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.875
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.851
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.758
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.883
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.829
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.840
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.754
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.879
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.726
MDP0000156895 Malus x domestica MDP0000156895 N 0.907
MDP0000212007 Malus x domestica MDP0000212007 N 0.708
MDP0000253709 Malus x domestica MDP0000253709 N 0.907
MDP0000283985 Malus x domestica MDP0000283985 N 0.801
MDP0000286821 Malus x domestica MDP0000286821 N 0.708
MDP0000497543 Malus x domestica MDP0000497543 N 0.911
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.861
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.701
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.843
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.829
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.883
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.779
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.797
mgf004596m Mimulus guttatus mgf004596m N 0.776
mgf004973m Mimulus guttatus mgf004973m N 0.808
mgf005294m Mimulus guttatus mgf005294m N 0.790
mgf009542m Mimulus guttatus mgf009542m N 0.826
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.777
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.754
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.754
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.754
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.777
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.754
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.751
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.744
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.758
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.751
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.854
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.883
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.879
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.858
ppa002584m Prunus persica ppa002584m N 0.705
ppa002618m Prunus persica ppa002618m N 0.833
ppa002620m Prunus persica ppa002620m N 0.833
30170.m013847 Ricinus communis 30170.m013847 N 0.854
29801.m003152 Ricinus communis 29801.m003152 N 0.858
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.722
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.744
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.722
SB06G021850 Sorghum bicolor Sb06g021850 N 0.722
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.868
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.819
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.730
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.730
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.712