CBU92546 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBU92546 T59707_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.921
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.921
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.921
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.900
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBU92546 RRM 16 85
CBU92546 RRM 107 176

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

301 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.921
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.759
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.921
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.843
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.921
LOC781499 Bos taurus ENSBTAG00000021580 I 0.837
LOC785445 Bos taurus ENSBTAG00000025621 I 0.872
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.858
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.900
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.794
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.764
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.858
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.851
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.921
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.921
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.837
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.893
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.864
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.921
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.844
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.914
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.845
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.900
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.837
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.893
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.864
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.851
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.921
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.871
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.803
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.879
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.817
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.879
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.907
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.845
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.837
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.845
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.000
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.832
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.900
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.817
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.893
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.837
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.837
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.829
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.829
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.837
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.921
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.836
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.759
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.837
LOC100066794 Equus caballus ENSECAG00000023237 I 0.836
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.921
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.907
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.000
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.871
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.921
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.836
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.850
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.803
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.893
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.921
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.837
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.907
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.771
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.757
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.921
HNRNPA3 Homo sapiens ENSG00000170144 I 0.837
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.900
HNRNPA1 Homo sapiens ENSG00000135486 D 0.921
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.879
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.921
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.907
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.773
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.914
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.921
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.900
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.844
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.900
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.914
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.858
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.837
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.837
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.901
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.850
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.803
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.837
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.000
Gm8991 Mus musculus ENSMUSG00000059179 I 0.836
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.837
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.921
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.893
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.837
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.914
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.921
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.831
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.914
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.907
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.921
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.914
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.907
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.893
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.858
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.914
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.907
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.900
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.921
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.830
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.907
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.000
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.810
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.886
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.914
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.921
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.921
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.764
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.837
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.921
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.921
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.801
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.000
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.794
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.750
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.879
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.921
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.837
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.000
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.757
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.814
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.866
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.000
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.921
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.829
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.886
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.746
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.000
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.000
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.886
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.782
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.837
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.886
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.837
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.773
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.871
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.000
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.000
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.844
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.766
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.837
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.786
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.836
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.773
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.837
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.921
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.850
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.782
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.871
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.793
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.850
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.921
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.851
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.872
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.837
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.000
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.921
CBF67578 Xenopus laevis CBF67578 I 0.831
CBF67672 Xenopus laevis CBF67672 I 1.000
CBU92428 Xenopus laevis CBU92428 I 0.986
CBU92451 Xenopus laevis CBU92451 I 0.831
P17130 Xenopus laevis P17130 I 0.986
P51968 Xenopus laevis P51968 I 0.836
CBF67555 Xenopus laevis CBF67555 I 0.986
AAI69881 Xenopus laevis AAI69881 I 0.831
AAH72090 Xenopus laevis AAH72090 I 1.000
AAH45260 Xenopus laevis AAH45260 I 0.979
AAA49950 Xenopus laevis AAA49950 I 0.831
AAA49949 Xenopus laevis AAA49949 I 0.836
AAA49742 Xenopus laevis AAA49742 I 0.986
AAA49741 Xenopus laevis AAA49741 I 0.986
P51992 Xenopus laevis P51992 I 0.831
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.979
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.843