MDP0000233609 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000233609 T57467_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000233609 RRM 18 85

Links

Other RRM family RBPs
Other Malus x domestica RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000134468 Malus x domestica MDP0000134468 I 0.926
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.912
PK15672.1 Cannabis sativa PK15672.1 I 0.884
ppa019392m Prunus persica ppa019392m I 0.884
ppa018926m Prunus persica ppa018926m I 0.884
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.882
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.882
29908.m006046 Ricinus communis 29908.m006046 I 0.882
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.882
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.870
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.868
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.853
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.841
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.812
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.797
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.797
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.797
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.794
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.794
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.794
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.794
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.783
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.783
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.779
ppa009964m Prunus persica ppa009964m I 0.779
MDP0000138486 Malus x domestica MDP0000138486 I 0.779
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.779
30076.m004440 Ricinus communis 30076.m004440 I 0.779
CU179634_3 Medicago truncatula CU179634_3 I 0.779
mgf017214m Mimulus guttatus mgf017214m I 0.779
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.765
MDP0000488395 Malus x domestica MDP0000488395 I 0.765
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
ppa009716m Prunus persica ppa009716m I 0.765
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.765
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.765
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.765
PK21213.1 Cannabis sativa PK21213.1 I 0.765
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.754
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.754
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.750
PK14266.1 Cannabis sativa PK14266.1 I 0.750
ppa016222m Prunus persica ppa016222m I 0.750
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.750
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.750
MDP0000118777 Malus x domestica MDP0000118777 I 0.739
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.739
MDP0000857317 Malus x domestica MDP0000857317 I 0.739
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.735
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.735
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.735
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
ppa018603m Prunus persica ppa018603m I 0.725
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.721
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.706
MDP0000184420 Malus x domestica MDP0000184420 I 0.706
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.706
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.706
MDP0000284454 Malus x domestica MDP0000284454 I 0.706
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.706