cassava23387.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava23387.valid.m1 T04763_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23387.valid.m1 CCCH ZF 262 284

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29908.m006046 Ricinus communis 29908.m006046 I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.000
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.000
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.000
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.000
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.000
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.000
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.000
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.000
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.000
CU179634_3 Medicago truncatula CU179634_3 I 0.000
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.000
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.000
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.000
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.000
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.000
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.000
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.000
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.000
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.000
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.000
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.000
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.000
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.000
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.000
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.000
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.000
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.000
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.000
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.000
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.000
MDP0000118777 Malus x domestica MDP0000118777 I 0.000
MDP0000134468 Malus x domestica MDP0000134468 I 0.000
MDP0000138486 Malus x domestica MDP0000138486 I 0.000
MDP0000184420 Malus x domestica MDP0000184420 I 0.000
MDP0000233609 Malus x domestica MDP0000233609 I 0.000
MDP0000284454 Malus x domestica MDP0000284454 I 0.000
MDP0000488395 Malus x domestica MDP0000488395 I 0.000
MDP0000548950 Malus x domestica MDP0000548950 I 0.000
MDP0000744398 Malus x domestica MDP0000744398 I 0.000
MDP0000857317 Malus x domestica MDP0000857317 I 0.000
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.000
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.000
PK14266.1 Cannabis sativa PK14266.1 I 0.000
PK15672.1 Cannabis sativa PK15672.1 I 0.000
PK21213.1 Cannabis sativa PK21213.1 I 0.000
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.000
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.000
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.000
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.000
ppa009716m Prunus persica ppa009716m I 0.000
ppa009964m Prunus persica ppa009964m I 0.000
ppa016222m Prunus persica ppa016222m I 0.000
ppa018603m Prunus persica ppa018603m I 0.000
ppa018926m Prunus persica ppa018926m I 0.000
ppa019392m Prunus persica ppa019392m I 0.000