ENSMMUG00000013136 (Macaca mulatta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSMMUG00000013136 T16911_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000017257 CSD 58 128
ENSMMUP00000017263 CSD 54 124
ENSMMUP00000017269 CSD 54 124

Links

Other CSD family RBPs
Other Macaca mulatta RBPs

214 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009003 Ricinus communis 30128.m009003 N 0.000
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.000
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.000
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.000
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.000
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.000
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.000
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.000
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.000
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.000
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.000
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.000
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.000
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.000
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.000
mgf008200m Mimulus guttatus mgf008200m N 0.000
mgf012653m Mimulus guttatus mgf012653m N 0.000
PK16552.1 Cannabis sativa PK16552.1 N 0.000
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.000
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.000
ppa001778m Prunus persica ppa001778m N 0.000
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.000