ppa006577m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa006577m T58374_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006577m RRM 70 140
ppa006577m RRM 163 234
ppa006577m RRM 272 336

Links

Other RRM family RBPs
Other Prunus persica RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29666.m001436 Ricinus communis 29666.m001436 I 0.788
29842.m003612 Ricinus communis 29842.m003612 N 0.740
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.702
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.755
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.740
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.702
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.716
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.803
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.827
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.827
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.827
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.827
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.827
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.721
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.736
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.745
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.736
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.707
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.707
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.740
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.745
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.750
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.745
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.750
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.702
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.707
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.707
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.707
LOC_Os03g37270 Oryza sativa LOC_Os03g37270 N 0.712
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.702
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.712
MDP0000223369 Malus x domestica MDP0000223369 N 0.918
MDP0000294628 Malus x domestica MDP0000294628 I 0.726
MDP0000614064 Malus x domestica MDP0000614064 N 0.923
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.702
mgf010468m Mimulus guttatus mgf010468m I 0.784
mgf014417m Mimulus guttatus mgf014417m N 0.755
PK10695.1 Cannabis sativa PK10695.1 I 0.731
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.798
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.736
ppa006617m Prunus persica ppa006617m N 0.716
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.760