Q4H2L7_CIOIN (Ciona intestinalis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCING00000010654 T16774_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.819
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.819
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.781
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.781
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.781
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.753
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000010620 CSD 25 96
ENSCINP00000021107 CSD 25 96

Links

Other CSD family RBPs
Other Ciona intestinalis RBPs

172 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YB-1 Homo sapiens ENSG00000065978 D 0.795
YBX2 Homo sapiens ENSG00000006047 D 0.753
ybx2-a Xenopus laevis AAI69706 D 0.781
GM24682 Drosophila sechellia FBgn0179545 I 0.722
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.722
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.000
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.795
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.740
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.795
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.740
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.795
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.795
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.795
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.767
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.000
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.000
GL15684 Drosophila persimilis FBgn0153288 I 0.736
GI13673 Drosophila mojavensis FBgn0136428 I 0.736
GH16919 Drosophila grimshawi FBgn0124390 I 0.736
GF10852 Drosophila ananassae FBgn0087892 I 0.736
yps Drosophila melanogaster FBgn0022959 I 0.722
cey-1 Caenorhabditis elegans F33A8.3 I 0.708
csda Xenopus tropicalis ENSXETG00000016239 I 0.781
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.795
CSDA Vicugna pacos ENSVPAG00000000876 I 0.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.795
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.795
YBX2 Sus scrofa ENSSSCG00000017938 I 0.767
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.708
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.781
Csda Rattus norvegicus ENSRNOG00000005480 I 0.795
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.795
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.795
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.753
CSDA Pan troglodytes ENSPTRG00000004681 I 0.795
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.795
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.795
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.000
YBX1 Procavia capensis ENSPCAG00000008397 I 0.000
YBX2 Procavia capensis ENSPCAG00000008019 I 0.767
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.000
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.767
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.000
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.753
CSDA Sus scrofa ENSSSCG00000000633 I 0.795
YBX1 Sorex araneus ENSSARG00000012628 I 0.000
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.000
YBX2 Sorex araneus ENSSARG00000000488 I 0.753
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.750
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.000
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.740
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.795
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.781
CSDA Procavia capensis ENSPCAG00000001397 I 0.726
Q00436 Xenopus laevis Q00436 I 0.795
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.764
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.764
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.764
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.764
Minc12652 Meloidogyne incognita Minc12652 I 0.000
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.708
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.000
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.000
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.722
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.736
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.736
AAA49715 Xenopus laevis AAA49715 I 0.795
AAA49716 Xenopus laevis AAA49716 I 0.781
P45441 Xenopus laevis P45441 I 0.781
P21574 Xenopus laevis P21574 I 0.781
P21573 Xenopus laevis P21573 I 0.795
CAA42778 Xenopus laevis CAA42778 I 0.795
AAI69704 Xenopus laevis AAI69704 I 0.781
AAI55915 Xenopus laevis AAI55915 I 0.781
AAI55914 Xenopus laevis AAI55914 I 0.781
AAI30161 Xenopus laevis AAI30161 I 0.795
AAI06324 Xenopus laevis AAI06324 I 0.795
AAH41191 Xenopus laevis AAH41191 I 0.795
AAA49924 Xenopus laevis AAA49924 I 0.781
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.806
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.000
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.736
146547 Helobdella robusta 146547 I 0.000
133388 Helobdella robusta 133388 I 0.000
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.778
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.722
PHUM156720 Pediculus humanus PHUM156720 I 0.736
PHUM156710 Pediculus humanus PHUM156710 I 0.778
ISCW005281 Ixodes scapularis ISCW005281 I 0.708
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.736
GE20150 Drosophila yakuba FBgn0237472 I 0.722
GK16710 Drosophila willistoni FBgn0218712 I 0.736
GJ14010 Drosophila virilis FBgn0201228 I 0.736
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.736
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.764
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.750
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.000
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.764
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.708
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.806
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.750
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.792
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.808
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.736
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.000
GD12750 Drosophila simulans FBgn0184477 I 0.722
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.781
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.767
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.000
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.708
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.795
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.750
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.000
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.767
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.781
ENSCJAG00000009207 Callithrix jacchus ENSCJAG00000009207 I 0.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.736
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.795
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.750
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.740
LOC100072964 Equus caballus ENSECAG00000009996 I 0.767
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.795
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.000
Csda Dipodomys ordii ENSDORG00000009103 I 0.795
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.000
ybx1 Danio rerio ENSDARG00000004757 I 0.795
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.958
CSDA Cavia porcellus ENSCPOG00000011329 I 0.795
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.795
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.767
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.000
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.000
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.795
CRE01789 Caenorhabditis remanei CRE01789 I 0.708
CJA05984 Caenorhabditis japonica CJA05984 I 0.000
CBN16711 Caenorhabditis brenneri CBN16711 I 0.708
CBG02981 Caenorhabditis briggsae CBG02981 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.736
AAEL001375 Aedes aegypti AAEL001375 I 0.736
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.778
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.736
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.736
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.736
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.736
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.767
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.767
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.722
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.722
YBX2 Canis familiaris ENSCAFG00000016128 I 0.767
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.795
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.795
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.000
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.716
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.795
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.781
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.795
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.795
Bm1_57515 Brugia malayi Bm1_57515 I 0.736
YBX2 Oryzias latipes ENSORLG00000018683 I 0.000
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.808
CSDA Monodelphis domestica ENSMODG00000018248 I 0.795
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.753
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.795
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.781
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.767
CSDA Macaca mulatta ENSMMUG00000022469 I 0.795
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.795
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.795
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.767
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.750
Ybx2 Mus musculus ENSMUSG00000018554 I 0.767
Ybx1 Mus musculus ENSMUSG00000028639 I 0.795
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.753
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.795
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.767
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.708
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.708
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.000
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.795
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.795
Csda Mus musculus ENSMUSG00000030189 I 0.795
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.722
YBX1 Microcebus murinus ENSMICG00000014984 I 0.795
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.795
CSDA Homo sapiens ENSG00000060138 I 0.795
CSDA Felis catus ENSFCAG00000018959 I 0.000
YBX1 Echinops telfairi ENSETEG00000014789 I 0.000
YBX2 Echinops telfairi ENSETEG00000014271 I 0.000
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.000
CSDA Echinops telfairi ENSETEG00000002557 I 0.795
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.795
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.753
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.795
LOC100067336 Equus caballus ENSECAG00000023592 I 0.795
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.753
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.795
LOC100065107 Equus caballus ENSECAG00000013777 I 0.795
CSDA Microcebus murinus ENSMICG00000004602 I 0.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.795
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.000
CSDA Loxodonta africana ENSLAFG00000017247 I 0.795
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.767
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.795
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.767
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.753
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.000
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.795
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.795
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.000