29801.m003152 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29801.m003152 T48689_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29801.m003152 RRM 26 96
29801.m003152 RRM 114 183
29801.m003152 RRM 205 274
29801.m003152 RRM 308 377

Links

Other RRM family RBPs
Other Ricinus communis RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002620m Prunus persica ppa002620m N 0.822
mgf004973m Mimulus guttatus mgf004973m N 0.811
mgf004596m Mimulus guttatus mgf004596m N 0.779
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.712
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.722
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.815
Glyma16g27670.1 Glycine max Glyma16g27670.1 N 0.705
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.819
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.883
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.779
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.765
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.886
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.751
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.765
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.772
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.744
mgf005294m Mimulus guttatus mgf005294m N 0.786
mgf009542m Mimulus guttatus mgf009542m N 0.826
ppa002618m Prunus persica ppa002618m N 0.822
ppa002607m Prunus persica ppa002607m N 0.858
MDP0000497543 Malus x domestica MDP0000497543 N 0.858
MDP0000286821 Malus x domestica MDP0000286821 N 0.712
MDP0000283985 Malus x domestica MDP0000283985 N 0.790
MDP0000253709 Malus x domestica MDP0000253709 N 0.854
MDP0000212007 Malus x domestica MDP0000212007 N 0.715
MDP0000156895 Malus x domestica MDP0000156895 N 0.854
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.733
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.865
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.794
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.815
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.733
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.712
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.737
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.719
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.886
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.755
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.747
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.851
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.875
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.744
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.733
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.723
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.762
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.755
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.747
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.779
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.705
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.769
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.794
PK02172.1 Cannabis sativa PK02172.1 N 0.826
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.762
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.915
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.847
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.915
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.712
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.840
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.854
30170.m013847 Ricinus communis 30170.m013847 N 0.868
28644.m000904 Ricinus communis 28644.m000904 N 0.712
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.705
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.790
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.772
SB06G021850 Sorghum bicolor Sb06g021850 N 0.730
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.719
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.840
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.904
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.851
PK00659.1 Cannabis sativa PK00659.1 N 0.765