Cucsa.244510 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.244510 T49604_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.244510.1 RRM 31 101
Cucsa.244510.1 RRM 119 188
Cucsa.244510.1 RRM 210 279
Cucsa.244510.1 RRM 313 382
Cucsa.244510.2 RRM 31 101
Cucsa.244510.2 RRM 119 188
Cucsa.244510.2 RRM 210 279
Cucsa.244510.2 RRM 313 382
Cucsa.244510.3 RRM 31 101
Cucsa.244510.3 RRM 119 188
Cucsa.244510.3 RRM 210 279
Cucsa.244510.3 RRM 313 382
Cucsa.244510.4 RRM 31 100
Cucsa.244510.4 RRM 134 203

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28644.m000904 Ricinus communis 28644.m000904 N 0.705
29801.m003152 Ricinus communis 29801.m003152 N 0.886
30170.m013847 Ricinus communis 30170.m013847 N 0.847
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.890
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.836
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.886
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.733
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.752
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.744
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.730
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.733
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.733
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.833
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.836
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.701
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.890
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.865
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.751
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.747
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.737
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.708
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.730
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.883
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.751
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.754
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.875
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.822
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.819
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.701
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.733
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.708
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.733
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.854
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.815
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.712
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.722
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.733
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.752
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.744
MDP0000156895 Malus x domestica MDP0000156895 N 0.851
MDP0000212007 Malus x domestica MDP0000212007 N 0.701
MDP0000253709 Malus x domestica MDP0000253709 N 0.851
MDP0000283985 Malus x domestica MDP0000283985 N 0.794
MDP0000286821 Malus x domestica MDP0000286821 N 0.701
MDP0000497543 Malus x domestica MDP0000497543 N 0.854
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.797
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.776
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.861
mgf004596m Mimulus guttatus mgf004596m N 0.765
mgf004973m Mimulus guttatus mgf004973m N 0.801
mgf005294m Mimulus guttatus mgf005294m N 0.783
mgf009542m Mimulus guttatus mgf009542m N 0.822
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.758
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.705
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.772
PK00659.1 Cannabis sativa PK00659.1 N 0.740
PK02172.1 Cannabis sativa PK02172.1 N 0.833
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.836
ppa002607m Prunus persica ppa002607m N 0.875
ppa002618m Prunus persica ppa002618m N 0.822
ppa002620m Prunus persica ppa002620m N 0.822
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.715
SB06G021850 Sorghum bicolor Sb06g021850 N 0.730
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.772
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.708
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.758
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.776