A9PEX9_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s31160 T45430_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s31160.1 RRM 27 97
POPTR_0001s31160.1 RRM 115 184
POPTR_0001s31160.1 RRM 206 275
POPTR_0001s31160.1 RRM 309 378

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.783
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.769
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.769
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.705
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.779
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.705
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.754
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.758
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.758
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.730
PK02172.1 Cannabis sativa PK02172.1 N 0.875
PK00659.1 Cannabis sativa PK00659.1 N 0.776
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.861
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.890
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.822
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.893
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.815
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.719
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.772
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.886
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.779
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.726
MDP0000212007 Malus x domestica MDP0000212007 N 0.719
MDP0000253709 Malus x domestica MDP0000253709 N 0.858
MDP0000156895 Malus x domestica MDP0000156895 N 0.858
MDP0000283985 Malus x domestica MDP0000283985 N 0.826
MDP0000286821 Malus x domestica MDP0000286821 N 0.719
MDP0000497543 Malus x domestica MDP0000497543 N 0.861
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.897
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.715
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.836
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.840
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.890
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.794
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.815
mgf004596m Mimulus guttatus mgf004596m N 0.794
mgf004973m Mimulus guttatus mgf004973m N 0.826
mgf005294m Mimulus guttatus mgf005294m N 0.794
mgf009542m Mimulus guttatus mgf009542m N 0.847
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.766
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.762
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.769
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.762
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.766
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.769
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.754
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.744
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.765
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.758
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.854
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.854
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.950
ppa002607m Prunus persica ppa002607m N 0.879
ppa002618m Prunus persica ppa002618m N 0.833
ppa002620m Prunus persica ppa002620m N 0.833
30170.m013847 Ricinus communis 30170.m013847 N 0.854
29801.m003152 Ricinus communis 29801.m003152 N 0.915
28644.m000904 Ricinus communis 28644.m000904 N 0.701
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.722
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.722
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.730
SB06G021850 Sorghum bicolor Sb06g021850 N 0.747
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.865
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.822
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.751
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.751
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.722