Sfpq (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSDORG00000008109 T079396_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
Sfpq
M08972_2.00		 Dipodomys ordii NGURGKKU JPLE
Sasse et al.(2025)
RM_Dip.ord_ENSDORG00000008109 		0.008

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.973
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.973
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.973
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.973
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.709
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.008
(88.56%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000007610 RRM 290 367
ENSDORP00000007610 RRM 364 431

RNA contacting residues

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.973
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.709
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.741
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.946
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.738
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.709
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.703
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.939
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.932
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.762
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.939
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.762
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.703
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.701
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.803
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.728
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.748
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.709
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.973
NONO Bos taurus ENSBTAG00000012152 I 0.709
PSPC1 Bos taurus ENSBTAG00000003934 I 0.748
SFPQ Bos taurus ENSBTAG00000016328 I 0.973
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.939
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.762
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.703
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.709
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.741
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.973
Aan_R015520 Calypte anna Aan_R015520 I 0.939
Aan_R001274 Calypte anna Aan_R001274 I 0.762
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.709
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.973
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.709
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.851
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.925
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.703
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.973
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.709
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.741
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.939
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.709
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.973
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.741
ENSCHOG00000009131 Choloepus hoffmanni ENSCHOG00000009131 I 0.741
nono Danio rerio ENSDARG00000020482 I 0.701
sfpq Danio rerio ENSDARG00000011564 I 0.750
pspc1 Danio rerio ENSDARG00000006621 I 0.701
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.973
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.741
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.709
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.748
SFPQ Echinops telfairi ENSETEG00000001095 I 0.973
NONO Equus caballus ENSECAG00000008502 I 0.709
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.973
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.709
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.748
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.973
PSPC1 Felis catus ENSFCAG00000027841 I 0.741
NONO Felis catus ENSFCAG00000014807 I 0.709
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.703
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.762
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.776
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.707
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.807
SFPQ Gallus gallus ENSGALG00000002514 I 0.925
NONO Gallus gallus ENSGALG00000005507 I 0.703
PSPC1 Gallus gallus ENSGALG00000017142 I 0.762
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.799
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.939
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.973
NONO Gorilla gorilla ENSGGOG00000006194 I 0.709
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.741
SFPQ Homo sapiens ENSG00000116560 D 0.973
PSPC1 Homo sapiens ENSG00000121390 I 0.741
NONO Homo sapiens ENSG00000147140 D 0.709
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.973
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.741
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.709
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.714
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.748
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.852
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.714
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.728
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.844
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.973
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.741
NONO Loxodonta africana ENSLAFG00000013422 I 0.709
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.709
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.741
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.849
NONO Macaca mulatta ENSMMUG00000020481 I 0.709
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.741
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.703
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.952
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.728
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.703
NONO Microcebus murinus ENSMICG00000000232 I 0.709
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.973
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.952
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.741
NONO Monodelphis domestica ENSMODG00000004445 I 0.703
Nono Mus musculus ENSMUSG00000031311 I 0.709
Pspc1 Mus musculus ENSMUSG00000021938 I 0.741
Sfpq Mus musculus ENSMUSG00000028820 I 0.973
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.709
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.741
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.966
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.709
NONO Myotis lucifugus ENSMLUG00000002489 I 0.709
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.741
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.959
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.973
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.709
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.741
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.973
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.709
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.762
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.778
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.709
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.741
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.973
sfpq Oryzias latipes ENSORLG00000007459 I 0.768
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.741
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.973
NONO Otolemur garnettii ENSOGAG00000004834 I 0.709
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.703
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.748
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.973
NONO Pan troglodytes ENSPTRG00000022010 I 0.709
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.741
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.973
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.741
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.973
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.709
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.741
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.952
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.709
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.701
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.703
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.777
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.709
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.952
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.762
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.709
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.741
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.973
SFPQ Procavia capensis ENSPCAG00000006164 I 0.973
NONO Procavia capensis ENSPCAG00000002541 I 0.709
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.912
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.735
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.709
Nono Rattus norvegicus ENSRNOG00000003689 I 0.709
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.741
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.973
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.952
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.703
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.741
NONO Sorex araneus ENSSARG00000007959 I 0.703
PSPC1 Sorex araneus ENSSARG00000000888 I 0.741
NONO Sus scrofa ENSSSCG00000023245 I 0.709
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.748
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.939
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.703
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.762
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.857
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.898
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.829
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.939
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.748
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.973
NONO Tursiops truncatus ENSTTRG00000009605 I 0.709
Tal_R009732 Tyto alba Tal_R009732 I 0.762
Tal_R009770 Tyto alba Tal_R009770 I 0.939
Tal_R004102 Tyto alba Tal_R004102 I 0.703
NONO Vicugna pacos ENSVPAG00000002272 I 0.709
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.973
nono.L Xenopus laevis XB-GENE-1002501 I 0.701
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.762
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.864
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.784