CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSEEUG00000011837
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000011837
T36828_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.844
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.844
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.844
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.830
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.709
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000010777
RRM
16
85
LFIGGLNFDTTSESLRSHFEQWGTVTDCEVMRDPDTKGSRGFGFVTYATVAEADAVMNAKPHRVDGRVVA
ENSEEUP00000010777
RRM
107
176
IFVGGVKEDTEEHHLRDYFEQFGKIEEIEIMTERGSGRKRGFAFVTFDDHDVVDKIVIQKYHTVNGHHCE
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
202 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R003219
Ailuropoda melanoleuca
Ame_R003219
N
0.000
CAC95017
Xenopus laevis
CAC95017
N
0.000
TIAL1
Erinaceus europaeus
ENSEEUG00000011861
N
0.000
TIAL1
Echinops telfairi
ENSETEG00000020276
N
0.000
TIAL1
Loxodonta africana
ENSLAFG00000003412
N
0.000
TIAL1
Meleagris gallopavo
ENSMGAG00000011368
N
0.000
TIAL1
Myotis lucifugus
ENSMLUG00000004645
N
0.000
TIAL1
Monodelphis domestica
ENSMODG00000008865
I
0.000
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.000
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.000
TIAL1
Otolemur garnettii
ENSOGAG00000011417
N
0.000
TIAL1
Sorex araneus
ENSSARG00000012980
N
0.000
TIAL1
Taeniopygia guttata
ENSTGUG00000011148
N
0.000
TIAL1
Takifugu rubripes
ENSTRUG00000017931
I
0.000
tial1
Xenopus tropicalis
ENSXETG00000010234
N
0.000