estExt_Genewise1Plus.C_180065 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_180065 T51402_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_180065 RRM 8 76
estExt_Genewise1Plus.C_180065 RRM 91 160

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000635 Ricinus communis 27613.m000635 N 0.741
29608.m000212 Ricinus communis 29608.m000212 N 0.727
30048.m000319 Ricinus communis 30048.m000319 N 0.719
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.719
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.712
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.712
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.719
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.705
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.712
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.719
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.719
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.719
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.734
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.727
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.707
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.719
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.719
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.748
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.727
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.712
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.712
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.719
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.719
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.712
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.712
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.705
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.719
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.727
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.748
MDP0000188788 Malus x domestica MDP0000188788 N 0.727
MDP0000204698 Malus x domestica MDP0000204698 N 0.727
MDP0000320618 Malus x domestica MDP0000320618 N 0.741
MDP0000609551 Malus x domestica MDP0000609551 N 0.727
MDP0000642684 Malus x domestica MDP0000642684 N 0.734
MDP0000907782 Malus x domestica MDP0000907782 N 0.741
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.727
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.705
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.734
mgf004139m Mimulus guttatus mgf004139m N 0.705
mgf009385m Mimulus guttatus mgf009385m N 0.734
mgf009486m Mimulus guttatus mgf009486m N 0.700
mgf012147m Mimulus guttatus mgf012147m N 0.712
PK13457.1 Cannabis sativa PK13457.1 N 0.719
PK25912.1 Cannabis sativa PK25912.1 N 0.734
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.719
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.727
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.712
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.719
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.723
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.712
ppa004834m Prunus persica ppa004834m N 0.719
ppa005119m Prunus persica ppa005119m N 0.748
ppa005122m Prunus persica ppa005122m N 0.719
ppa005132m Prunus persica ppa005132m N 0.741