CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AT4G26650
(
Arabidopsis thaliana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AT4G26650-TAIR-G
T32789_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G26650.1-P
RRM
17
85
LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVE
AT4G26650.1-P
RRM
124
193
IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVE
AT4G26650.2-P
RRM
14
82
LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVE
AT4G26650.2-P
RRM
121
190
IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
1.000
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.899
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.892
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.892
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.885
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.885
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.879
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.878
PK25912.1
Cannabis sativa
PK25912.1
N
0.871
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.863
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.856
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.856
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.856
ppa004834m
Prunus persica
ppa004834m
N
0.856
ppa005122m
Prunus persica
ppa005122m
N
0.856
MDP0000204698
Malus x domestica
MDP0000204698
N
0.849
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.849
27613.m000635
Ricinus communis
27613.m000635
N
0.842
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.842
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.842
MDP0000188788
Malus x domestica
MDP0000188788
N
0.842
MDP0000609551
Malus x domestica
MDP0000609551
N
0.842
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.842
mgf009385m
Mimulus guttatus
mgf009385m
N
0.835
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.835
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.835
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.827
mgf012147m
Mimulus guttatus
mgf012147m
N
0.820
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.816
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.814
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.814
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.813
ppa005119m
Prunus persica
ppa005119m
N
0.806
ppa005132m
Prunus persica
ppa005132m
N
0.806
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.806
29608.m000212
Ricinus communis
29608.m000212
N
0.806
30048.m000319
Ricinus communis
30048.m000319
N
0.806
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.806
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.806
MDP0000320618
Malus x domestica
MDP0000320618
N
0.799
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.799
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.799
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.799
MDP0000907782
Malus x domestica
MDP0000907782
N
0.799
mgf009486m
Mimulus guttatus
mgf009486m
N
0.793
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.791
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.791
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.791
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.791
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.791
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.791
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.791
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.791
MDP0000642684
Malus x domestica
MDP0000642684
N
0.784
PK13457.1
Cannabis sativa
PK13457.1
N
0.784
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.784
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.784
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.777
mgf004139m
Mimulus guttatus
mgf004139m
N
0.777
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.777
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.770
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.770
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.770
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.770
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.763
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.763
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.755
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.755
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.755
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.741
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.712
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.705