cassava10847.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava10847.m1 T49084_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava10847.m1 RRM 8 76
cassava10847.m1 RRM 108 172

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.935
27613.m000635 Ricinus communis 27613.m000635 N 0.935
ppa004834m Prunus persica ppa004834m N 0.885
ppa005122m Prunus persica ppa005122m N 0.885
PK25912.1 Cannabis sativa PK25912.1 N 0.878
MDP0000204698 Malus x domestica MDP0000204698 N 0.878
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.871
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.871
MDP0000188788 Malus x domestica MDP0000188788 N 0.871
MDP0000609551 Malus x domestica MDP0000609551 N 0.871
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.861
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.856
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.856
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.850
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.849
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.849
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.842
ppa005132m Prunus persica ppa005132m N 0.842
ppa005119m Prunus persica ppa005119m N 0.842
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.842
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.835
MDP0000320618 Malus x domestica MDP0000320618 N 0.835
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.835
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.833
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.829
MDP0000907782 Malus x domestica MDP0000907782 N 0.827
MDP0000642684 Malus x domestica MDP0000642684 N 0.827
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.827
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.827
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.820
29608.m000212 Ricinus communis 29608.m000212 N 0.820
mgf009385m Mimulus guttatus mgf009385m N 0.820
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.820
30048.m000319 Ricinus communis 30048.m000319 N 0.813
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.813
mgf012147m Mimulus guttatus mgf012147m N 0.813
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.807
PK13457.1 Cannabis sativa PK13457.1 N 0.806
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.806
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.806
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.799
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.799
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.799
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.799
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.799
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.799
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.799
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.794
SB02G005670 Sorghum bicolor Sb02g005670 N 0.791
SB02G005620 Sorghum bicolor Sb02g005620 N 0.791
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.791
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.791
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.791
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.791
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.791
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.784
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.784
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.784
SB02G037690 Sorghum bicolor Sb02g037690 N 0.784
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.784
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.784
mgf004139m Mimulus guttatus mgf004139m N 0.784
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.777
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.777
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.777
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.770
mgf009486m Mimulus guttatus mgf009486m N 0.750
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.741
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.741
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.727
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.727
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.712
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.705