CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava10847.m1
(
Manihot esculenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
cassava10847.m1
T49084_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava10847.m1
RRM
8
76
LFVGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVIIDKHMIDGRTVE
cassava10847.m1
RRM
108
172
IFVGGLASTVTDSDFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDTVDRVLHKTFHELN
Links
Other
RRM
family RBPs
Other
Manihot esculenta
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.935
27613.m000635
Ricinus communis
27613.m000635
N
0.935
ppa004834m
Prunus persica
ppa004834m
N
0.885
ppa005122m
Prunus persica
ppa005122m
N
0.885
PK25912.1
Cannabis sativa
PK25912.1
N
0.878
MDP0000204698
Malus x domestica
MDP0000204698
N
0.878
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.871
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.871
MDP0000188788
Malus x domestica
MDP0000188788
N
0.871
MDP0000609551
Malus x domestica
MDP0000609551
N
0.871
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.861
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.856
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.856
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.850
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.849
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.849
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.842
ppa005132m
Prunus persica
ppa005132m
N
0.842
ppa005119m
Prunus persica
ppa005119m
N
0.842
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.842
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.835
MDP0000320618
Malus x domestica
MDP0000320618
N
0.835
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.835
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.833
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.829
MDP0000907782
Malus x domestica
MDP0000907782
N
0.827
MDP0000642684
Malus x domestica
MDP0000642684
N
0.827
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.827
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.827
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.820
29608.m000212
Ricinus communis
29608.m000212
N
0.820
mgf009385m
Mimulus guttatus
mgf009385m
N
0.820
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.820
30048.m000319
Ricinus communis
30048.m000319
N
0.813
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.813
mgf012147m
Mimulus guttatus
mgf012147m
N
0.813
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.807
PK13457.1
Cannabis sativa
PK13457.1
N
0.806
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.806
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.806
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.799
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.799
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.799
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.799
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.799
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.799
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.799
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.794
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.791
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.791
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.791
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.791
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.791
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.791
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.791
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.784
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.784
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.784
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.784
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.784
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.784
mgf004139m
Mimulus guttatus
mgf004139m
N
0.784
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.777
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.777
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.777
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.770
mgf009486m
Mimulus guttatus
mgf009486m
N
0.750
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.741
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.741
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.727
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.727
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.712
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.705