mgf004139m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf004139m T53612_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf004139m RRM 6 74
mgf004139m RRM 106 175

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf009486m Mimulus guttatus mgf009486m N 0.879
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.856
mgf012147m Mimulus guttatus mgf012147m N 0.842
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.842
30048.m000319 Ricinus communis 30048.m000319 N 0.842
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.842
PK13457.1 Cannabis sativa PK13457.1 N 0.835
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.835
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.835
29608.m000212 Ricinus communis 29608.m000212 N 0.835
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.835
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.835
ppa005119m Prunus persica ppa005119m N 0.827
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.827
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.827
ppa005132m Prunus persica ppa005132m N 0.827
MDP0000907782 Malus x domestica MDP0000907782 N 0.820
PK25912.1 Cannabis sativa PK25912.1 N 0.820
mgf009385m Mimulus guttatus mgf009385m N 0.820
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.820
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.820
MDP0000320618 Malus x domestica MDP0000320618 N 0.820
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.820
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.820
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.813
27613.m000635 Ricinus communis 27613.m000635 N 0.813
MDP0000609551 Malus x domestica MDP0000609551 N 0.813
MDP0000204698 Malus x domestica MDP0000204698 N 0.813
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.813
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.813
MDP0000188788 Malus x domestica MDP0000188788 N 0.813
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.809
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.807
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.806
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.806
ppa004834m Prunus persica ppa004834m N 0.806
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.806
MDP0000642684 Malus x domestica MDP0000642684 N 0.806
ppa005122m Prunus persica ppa005122m N 0.806
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.800
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.799
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.799
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.799
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.799
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.799
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.793
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.791
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.791
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.791
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.791
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.791
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.791
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.791
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.784
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.784
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.784
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.784
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.777
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.777
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.777
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.777
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.777
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.777
SB02G005620 Sorghum bicolor Sb02g005620 N 0.777
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.777
SB02G005670 Sorghum bicolor Sb02g005670 N 0.777
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.770
SB02G037690 Sorghum bicolor Sb02g037690 N 0.770
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.763
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.741
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.712
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.705