XM_002869554.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.7__1574__AT4G26650.1 T44577_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__1574__AT4G26650.1 RRM 17 85
fgenesh2_kg.7__1574__AT4G26650.1 RRM 124 193

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 1.000
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.899
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.892
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.892
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.885
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.885
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.879
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.878
PK25912.1 Cannabis sativa PK25912.1 N 0.871
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.863
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.856
ppa004834m Prunus persica ppa004834m N 0.856
ppa005122m Prunus persica ppa005122m N 0.856
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.856
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.856
MDP0000204698 Malus x domestica MDP0000204698 N 0.849
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.849
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.842
MDP0000188788 Malus x domestica MDP0000188788 N 0.842
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.842
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.842
MDP0000609551 Malus x domestica MDP0000609551 N 0.842
27613.m000635 Ricinus communis 27613.m000635 N 0.842
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.835
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.835
mgf009385m Mimulus guttatus mgf009385m N 0.835
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.827
mgf012147m Mimulus guttatus mgf012147m N 0.820
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.816
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.814
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.814
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.813
ppa005132m Prunus persica ppa005132m N 0.806
ppa005119m Prunus persica ppa005119m N 0.806
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.806
30048.m000319 Ricinus communis 30048.m000319 N 0.806
29608.m000212 Ricinus communis 29608.m000212 N 0.806
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.806
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.806
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.799
MDP0000320618 Malus x domestica MDP0000320618 N 0.799
MDP0000907782 Malus x domestica MDP0000907782 N 0.799
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.799
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.799
mgf009486m Mimulus guttatus mgf009486m N 0.793
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.791
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.791
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.791
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.791
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.791
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.791
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.791
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.791
PK13457.1 Cannabis sativa PK13457.1 N 0.784
MDP0000642684 Malus x domestica MDP0000642684 N 0.784
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.784
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.784
mgf004139m Mimulus guttatus mgf004139m N 0.777
SB02G005670 Sorghum bicolor Sb02g005670 N 0.777
SB02G005620 Sorghum bicolor Sb02g005620 N 0.777
SB02G037690 Sorghum bicolor Sb02g037690 N 0.770
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.770
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.770
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.770
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.763
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.763
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.755
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.755
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.755
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.741
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.712
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.705