estExt_Genewise1.C_1590063 (Capitella teleta)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		estExt_Genewise1.C_1590063 T07548_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF7
M353_0.6 		Homo sapiens ACGAGAGAY SELEX
Cook et al.(2011)
954_10094314 		0.759
SRSF7
M331_0.6 		Homo sapiens AGACKACGAY SELEX
Cook et al.(2011)
790_10094314 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_1590063 RRM 32 97
estExt_Genewise1.C_1590063 CCHC ZF 152 168

Links

Other CCHC ZF,RRM family RBPs
Other Capitella teleta RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009316m Prunus persica ppa009316m N 0.000
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.000
mgf010445m Mimulus guttatus mgf010445m N 0.000
mgf003025m Mimulus guttatus mgf003025m N 0.000
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.000
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.000
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.000
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.000
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.000
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.000
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.000
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.000
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.000
ppa009199m Prunus persica ppa009199m N 0.000
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.000
MDP0000275117 Malus x domestica MDP0000275117 N 0.000
MDP0000263392 Malus x domestica MDP0000263392 N 0.000
MDP0000217837 Malus x domestica MDP0000217837 N 0.000
MDP0000130160 Malus x domestica MDP0000130160 N 0.000
MDP0000120315 Malus x domestica MDP0000120315 N 0.000
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.000
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.000
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.000
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.000
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.000
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.000
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.000
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.000
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.000
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.000
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.000
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.000
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.000
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.000
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.000
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.000
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.000
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.000
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.000
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.000
27843.m000162 Ricinus communis 27843.m000162 N 0.000
27843.m000161 Ricinus communis 27843.m000161 N 0.000
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.000
SB06G032000 Sorghum bicolor Sb06g032000 N 0.000
SB04G006450 Sorghum bicolor Sb04g006450 N 0.000
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.000
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.000