estExt_Genewise1.C_960051 (Physcomitrella patens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 estExt_Genewise1.C_960051 T24810_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_960051 PUF 797 829
estExt_Genewise1.C_960051 PUF 833 866
estExt_Genewise1.C_960051 PUF 869 904
estExt_Genewise1.C_960051 PUF 905 939
estExt_Genewise1.C_960051 PUF 941 973
estExt_Genewise1.C_960051 PUF 978 1013
estExt_Genewise1.C_960051 PUF 1014 1048
estExt_Genewise1.C_960051 PUF 1061 1090

Links

Other PUF family RBPs
Other Physcomitrella patens RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.784
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.770
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.773
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.773
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.777
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.777
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.771
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.739
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.858
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.740
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.931
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.935
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.784
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.773
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.783
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.703
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.759
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.740
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.821
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.822
mgf011401m Mimulus guttatus mgf011401m N 0.721
mgf015234m Mimulus guttatus mgf015234m N 0.747
mgf015734m Mimulus guttatus mgf015734m N 0.775
MDP0000313902 Malus x domestica MDP0000313902 N 0.705
MDP0000314338 Malus x domestica MDP0000314338 N 0.780
MDP0000319167 Malus x domestica MDP0000319167 N 0.789
MDP0000776183 Malus x domestica MDP0000776183 N 0.770
ppa000626m Prunus persica ppa000626m N 0.784
ppa000627m Prunus persica ppa000627m N 0.785
ppa000731m Prunus persica ppa000731m N 0.769
ppa000898m Prunus persica ppa000898m N 0.717
MDP0000277305 Malus x domestica MDP0000277305 N 0.706
MDP0000191652 Malus x domestica MDP0000191652 N 0.742
MDP0000176743 Malus x domestica MDP0000176743 N 0.718
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.739
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.743
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.739
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.734
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.775
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.776
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.705
MDP0000119814 Malus x domestica MDP0000119814 N 0.700
ppa016404m Prunus persica ppa016404m N 0.710
PK00601.1 Cannabis sativa PK00601.1 N 0.777
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.732
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.737
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.741
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.729
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.788
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.795
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.709
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.780
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.743
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.743
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.702
PK01617.1 Cannabis sativa PK01617.1 N 0.759
PK21390.1 Cannabis sativa PK21390.1 N 0.773
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.745
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.737
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.745
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.708
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.737
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.751
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.737
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.733
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.751
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.704
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.737
29595.m000292 Ricinus communis 29595.m000292 N 0.755
30143.m001162 Ricinus communis 30143.m001162 N 0.745
30143.m001164 Ricinus communis 30143.m001164 N 0.781
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.751
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.783
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.776
SB09G001090 Sorghum bicolor Sb09g001090 N 0.743
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.701
SB04G037410 Sorghum bicolor Sb04g037410 N 0.743
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.702
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.773
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.747
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.776
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.757
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.787
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.740
SB03G039600 Sorghum bicolor Sb03g039600 N 0.773
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.775