cassava17495.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava17495.valid.m1 T49141_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava17495.valid.m1 RRM 31 101
cassava17495.valid.m1 RRM 119 188
cassava17495.valid.m1 RRM 210 279
cassava17495.valid.m1 RRM 313 382

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28644.m000904 Ricinus communis 28644.m000904 N 0.708
29801.m003152 Ricinus communis 29801.m003152 N 0.840
30170.m013847 Ricinus communis 30170.m013847 N 0.826
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.836
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.808
B9H7X9_POPTR Populus trichocarpa POPTR_0005s22040 N 0.701
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.843
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.730
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.770
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.765
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.720
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.754
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.730
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.936
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.715
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.836
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.829
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.836
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.744
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.744
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.737
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.708
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.733
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.851
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.762
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.769
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.854
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.797
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.794
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.705
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.730
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.719
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.730
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.847
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.843
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.730
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.722
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.730
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.770
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.765
MDP0000156895 Malus x domestica MDP0000156895 N 0.833
MDP0000212007 Malus x domestica MDP0000212007 N 0.733
MDP0000253709 Malus x domestica MDP0000253709 N 0.833
MDP0000283985 Malus x domestica MDP0000283985 N 0.790
MDP0000286821 Malus x domestica MDP0000286821 N 0.726
MDP0000497543 Malus x domestica MDP0000497543 N 0.829
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.794
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.779
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.840
mgf004596m Mimulus guttatus mgf004596m N 0.744
mgf004973m Mimulus guttatus mgf004973m N 0.794
mgf005294m Mimulus guttatus mgf005294m N 0.751
mgf009542m Mimulus guttatus mgf009542m N 0.815
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.733
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.722
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.754
PK00659.1 Cannabis sativa PK00659.1 N 0.804
PK02172.1 Cannabis sativa PK02172.1 N 0.826
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.815
ppa002584m Prunus persica ppa002584m N 0.705
ppa002607m Prunus persica ppa002607m N 0.843
ppa002618m Prunus persica ppa002618m N 0.815
ppa002620m Prunus persica ppa002620m N 0.815
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.722
SB06G021850 Sorghum bicolor Sb06g021850 N 0.722
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.747
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.722
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.737
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.758