Cucsa.333940 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Cucsa.333940 T49636_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.333940.1 CCCH ZF 233 257
Cucsa.333940.1 RRM 374 434
Cucsa.333940.2 CCCH ZF 233 257
Cucsa.333940.2 RRM 374 434
Cucsa.333940.3 CCCH ZF 233 257
Cucsa.333940.3 RRM 374 434
Cucsa.333940.4 CCCH ZF 233 257
Cucsa.333940.4 RRM 374 434
Cucsa.333940.5 CCCH ZF 233 257
Cucsa.333940.5 RRM 374 434
Cucsa.333940.6 CCCH ZF 233 257
Cucsa.333940.6 RRM 374 434
Cucsa.333940.7 CCCH ZF 233 257
Cucsa.333940.7 RRM 374 434
Cucsa.333940.8 RRM 334 394

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006471 Ricinus communis 30169.m006471 N 0.837
30169.m006472 Ricinus communis 30169.m006472 N 0.849
AT1G51520 Arabidopsis thaliana AT1G51520-TAIR-G N 0.721
AT3G21100 Arabidopsis thaliana AT3G21100-TAIR-G N 0.803
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.805
AT3G63450 Arabidopsis thaliana AT3G63450-TAIR-G N 0.836
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.767
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.791
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.872
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.802
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.802
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.814
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.802
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.791
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.767
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.767
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.767
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.839
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.826
cassava2293.valid.m1 Manihot esculenta cassava2293.valid.m1 N 0.803
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.837
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.837
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.802
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.701
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.791
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.791
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.791
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.791
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.895
Cucsa.067590 Cucumis sativus Cucsa.067590 N 0.820
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.826
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.733
e_gw1.43.473.1 Selaginella moellendorfii e_gw1.43.473.1 N 0.738
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.908
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.791
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.791
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.908
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.791
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.791
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.852
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.803
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.791
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.721
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.791
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.767
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.791
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.814
GSVIVG00030048001 Vitis vinifera GSVIVG00030048001 N 0.787
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.860
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.791
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.814
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.802
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.791
MDP0000120231 Malus x domestica MDP0000120231 N 0.814
MDP0000120462 Malus x domestica MDP0000120462 N 0.814
MDP0000164538 Malus x domestica MDP0000164538 N 0.872
MDP0000214403 Malus x domestica MDP0000214403 N 0.756
MDP0000214823 Malus x domestica MDP0000214823 N 0.738
MDP0000220601 Malus x domestica MDP0000220601 N 0.767
MDP0000243086 Malus x domestica MDP0000243086 N 0.791
MDP0000256775 Malus x domestica MDP0000256775 N 0.744
MDP0000259773 Malus x domestica MDP0000259773 N 0.744
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.837
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.897
mgf000973m Mimulus guttatus mgf000973m N 0.814
mgf002273m Mimulus guttatus mgf002273m N 0.814
mgf013141m Mimulus guttatus mgf013141m N 0.869
mgf014647m Mimulus guttatus mgf014647m N 0.779
PK18074.1 Cannabis sativa PK18074.1 N 0.884
PK20504.1 Cannabis sativa PK20504.1 N 0.721
PK28383.1 Cannabis sativa PK28383.1 N 0.820
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.791
ppa002383m Prunus persica ppa002383m N 0.884
ppa002413m Prunus persica ppa002413m N 0.802
ppa023263m Prunus persica ppa023263m N 0.802
SB01G036490 Sorghum bicolor Sb01g036490 N 0.791
SB02G043180 Sorghum bicolor Sb02g043180 N 0.791
SB05G001540 Sorghum bicolor Sb05g001540 N 0.756
SB08G001980 Sorghum bicolor Sb08g001980 N 0.779
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.862
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.767
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.805
XM_002883237.1 Arabidopsis lyrata fgenesh2_kg.3__2330__AT3G21100.2 N 0.820
XM_002891597.1 Arabidopsis lyrata fgenesh2_kg.1__4219__AT1G51520.1 N 0.770