ENSTNIG00000011331 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000011331 T42096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.872
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.872
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.735
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000014274 RRM 195 259
ENSTNIP00000014274 RRM 269 334

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.000
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.000
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.000
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.000
PK10695.1 Cannabis sativa PK10695.1 I 0.000
PK15181.1 Cannabis sativa PK15181.1 N 0.000
Cucsa.085240 Cucumis sativus Cucsa.085240 N 0.000
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.000
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.000
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.000
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.000
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.000
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.000
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.000
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.000
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.000
MDP0000614064 Malus x domestica MDP0000614064 N 0.000
MDP0000223369 Malus x domestica MDP0000223369 N 0.000
MDP0000294628 Malus x domestica MDP0000294628 I 0.000
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.000
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.000
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.000
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.000
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.000
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.000
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.000
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.000
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.000
mgf010468m Mimulus guttatus mgf010468m I 0.000
mgf014417m Mimulus guttatus mgf014417m N 0.000
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.000
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.000
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.000
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.000
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.000
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.000
POPTR_0011s14150 Populus trichocarpa POPTR_0011s14150 N 0.000
ppa006577m Prunus persica ppa006577m I 0.000
ppa006617m Prunus persica ppa006617m N 0.000
29666.m001436 Ricinus communis 29666.m001436 I 0.000
29842.m003612 Ricinus communis 29842.m003612 N 0.000
SB01G016170 Sorghum bicolor Sb01g016170 N 0.000
Sb07g005360 Sorghum bicolor Sb07g005360 N 0.000
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.000
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.000