estExt_Genewise1.C_630098 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_630098 T51296_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_630098 RRM 21 88

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.809
AAEL005909 Aedes aegypti AAEL005909 N 0.809
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.765
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.794
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.765
AGAP002780 Anopheles gambiae AGAP002780 N 0.809
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.794
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.899
XM_002883819.1 Arabidopsis lyrata scaffold_303681.1 N 0.768
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.899
32497 Aureococcus anophagefferens 32497 N 0.784
EDO06533.1 Babesia bovis EDO06533.1 N 0.750
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.000
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.765
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.926
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.779
CBN08400 Caenorhabditis brenneri CBN08400 N 0.000
CBG06987 Caenorhabditis briggsae CBG06987 N 0.000
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.000
CJA01433 Caenorhabditis japonica CJA01433 N 0.706
CRE22109 Caenorhabditis remanei CRE22109 N 0.000
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.765
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.765
PK21780.1 Cannabis sativa PK21780.1 N 0.985
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.779
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.765
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.868
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.794
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.882
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.765
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.000
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.794
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.794
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.882
CMU_001200 Cryptosporidium muris CMU_001200 N 0.000
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.913
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.809
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.809
sf3b14 Danio rerio ENSDARG00000009753 N 0.765
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.812
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.765
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.721
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.765
GF10910 Drosophila ananassae FBgn0087950 N 0.783
GG14070 Drosophila erecta FBgn0106332 N 0.783
GH16287 Drosophila grimshawi FBgn0123758 N 0.783
CG13298 Drosophila melanogaster FBgn0035692 N 0.783
GI13232 Drosophila mojavensis FBgn0135989 N 0.783
GL22529 Drosophila persimilis FBgn0160121 N 0.783
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.783
GM13852 Drosophila sechellia FBgn0168783 N 0.783
GD13137 Drosophila simulans FBgn0184859 N 0.783
GJ12004 Drosophila virilis FBgn0199256 N 0.783
GK17258 Drosophila willistoni FBgn0219257 N 0.783
GE20495 Drosophila yakuba FBgn0068445 N 0.783
LOC100056247 Equus caballus ENSECAG00000015618 N 0.765
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.765
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.739
SF3B14 Gallus gallus ENSGALG00000016501 N 0.765
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.765
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.956
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.928
68671 Helobdella robusta 68671 N 0.735
AC008073.5 Homo sapiens ENSG00000115128 N 0.765
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.779
ISCW024082 Ixodes scapularis ISCW024082 N 0.824
LOAG_04189 Loa loa LOAG_04189 N 0.754
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.750
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.928
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.765
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.765
MDP0000916880 Malus x domestica MDP0000916880 N 0.926
MDP0000185506 Malus x domestica MDP0000185506 N 0.985
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.985
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.928
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.765
Minc01156 Meloidogyne incognita Minc01156 N 0.750
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.882
mgf016428m Mimulus guttatus mgf016428m N 0.913
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.750
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.710
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.765
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.765
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.794
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.794
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.794
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.710
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.721
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.765
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.765
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.956
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.956
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.750
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.765
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.809
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.794
PHUM617060 Pediculus humanus PHUM617060 N 0.824
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.783
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.710
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.870
PITG_10282 Phytophthora infestans PITG_10282 N 0.870
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.855
s_454910 Phytophthora sojae s_454910 N 0.870
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.725
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.739
PFL1200c Plasmodium falciparum PFL1200c N 0.735
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.735
PVX_123875 Plasmodium vivax PVX_123875 N 0.735
PY07239 Plasmodium yoelii PY07239 N 0.000
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.765
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.985
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.971
PPA24922 Pristionchus pacificus PPA24922 N 0.735
ppa013407m Prunus persica ppa013407m N 0.985
ppa013405m Prunus persica ppa013405m N 0.985
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.765
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.739
29868.m000351 Ricinus communis 29868.m000351 N 0.985
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.882
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.779
Smp_032060 Schistosoma mansoni Smp_032060 N 0.779
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.971
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.765
SB01G003790 Sorghum bicolor Sb01g003790 N 0.941
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.725
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.765
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.765
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.779
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.765
160.m00066 Tetrahymena thermophila 160.m00066 N 0.710
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.779
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.797
TA13725 Theileria annulata TA13725 N 0.735
TP02_0539 Theileria parva TP02_0539 N 0.000
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.710
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.710
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.710
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.794
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.783
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.765
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.765
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.765
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.985
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.912
AAH57709 Xenopus laevis AAH57709 N 0.750
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.765
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.941
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.941