CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF5
(
Pan troglodytes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPTRG00000010259
T40696_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.962
BRUNOL6
M178_0.6
Homo sapiens
UGUGDKG
RNAcompete
Ray et al.(2013)
RNCMPT00187
0.810
BRUNOL4
M004_0.6
Homo sapiens
KGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00004
0.739
unc-75
M079_0.6
Caenorhabditis elegans
UGUUGUD
RNAcompete
Ray et al.(2013)
RNCMPT00081
0.735
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000017431
RRM
47
116
LFVGQIPRHLDEKDLKPLFEQFGRIHENAVLKDPYTGMHKGCAFLTYCARDSAIKAQGAVHEQKTLSGDR
ENSPTRP00000017431
RRM
118
186
LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
ENSPTRP00000017431
RRM
384
454
LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
ENSPTRP00000017434
RRM
47
116
LFVGQIPRHLDEKDLKPLFEQFGRIHENAVLKDPYTGMHKGCAFLTYCARDSAIKAQGAVHEQKTLSGDR
ENSPTRP00000017434
RRM
118
186
LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
Links
Other
RRM
family RBPs
Other
Pan troglodytes
RBPs
95 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.10134_g
Serpula lacrymans
Genemark.10134_g
N
0.000
Genemark.10428_g
Serpula lacrymans
Genemark.10428_g
N
0.000
Genemark.10431_g
Serpula lacrymans
Genemark.10431_g
N
0.000
Genemark.10542_g
Serpula lacrymans
Genemark.10542_g
N
0.000
Genemark.10616_g
Serpula lacrymans
Genemark.10616_g
N
0.000
Genemark.10659_g
Serpula lacrymans
Genemark.10659_g
N
0.000
Genemark.10663_g
Serpula lacrymans
Genemark.10663_g
N
0.000
Genemark.10994_g
Serpula lacrymans
Genemark.10994_g
N
0.000
Genemark.114_g
Serpula lacrymans
Genemark.114_g
N
0.000
Genemark.11728_g
Serpula lacrymans
Genemark.11728_g
N
0.000
Genemark.11784_g
Serpula lacrymans
Genemark.11784_g
N
0.000
Genemark.11883_g
Serpula lacrymans
Genemark.11883_g
N
0.000
Genemark.12078_g
Serpula lacrymans
Genemark.12078_g
N
0.000
Genemark.12100_g
Serpula lacrymans
Genemark.12100_g
N
0.000
Genemark.12122_g
Serpula lacrymans
Genemark.12122_g
N
0.000
Genemark.12220_g
Serpula lacrymans
Genemark.12220_g
N
0.000
Genemark.12630_g
Serpula lacrymans
Genemark.12630_g
N
0.000
Genemark.12634_g
Serpula lacrymans
Genemark.12634_g
N
0.000
Genemark.1711_g
Serpula lacrymans
Genemark.1711_g
N
0.000
Genemark.1916_g
Serpula lacrymans
Genemark.1916_g
N
0.000
Genemark.1932_g
Serpula lacrymans
Genemark.1932_g
N
0.000
Genemark.2433_g
Serpula lacrymans
Genemark.2433_g
N
0.000
Genemark.2704_g
Serpula lacrymans
Genemark.2704_g
N
0.000
Genemark.2746_g
Serpula lacrymans
Genemark.2746_g
N
0.000
Genemark.2815_g
Serpula lacrymans
Genemark.2815_g
N
0.000
Genemark.2836_g
Serpula lacrymans
Genemark.2836_g
N
0.000
Genemark.2894_g
Serpula lacrymans
Genemark.2894_g
N
0.000
Genemark.291_g
Serpula lacrymans
Genemark.291_g
N
0.000
Genemark.3177_g
Serpula lacrymans
Genemark.3177_g
N
0.000
Genemark.383_g
Serpula lacrymans
Genemark.383_g
N
0.000
Genemark.398_g
Serpula lacrymans
Genemark.398_g
N
0.000
Genemark.4171_g
Serpula lacrymans
Genemark.4171_g
N
0.000
Genemark.4605_g
Serpula lacrymans
Genemark.4605_g
N
0.000
Genemark.4784_g
Serpula lacrymans
Genemark.4784_g
N
0.000
Genemark.4804_g
Serpula lacrymans
Genemark.4804_g
N
0.000
Genemark.4852_g
Serpula lacrymans
Genemark.4852_g
N
0.000
Genemark.4875_g
Serpula lacrymans
Genemark.4875_g
N
0.000
Genemark.697_g
Serpula lacrymans
Genemark.697_g
N
0.000
Genemark.7181_g
Serpula lacrymans
Genemark.7181_g
N
0.000
Genemark.7317_g
Serpula lacrymans
Genemark.7317_g
N
0.000
Genemark.7905_g
Serpula lacrymans
Genemark.7905_g
N
0.000
Genemark.8449_g
Serpula lacrymans
Genemark.8449_g
N
0.000
Genemark.8452_g
Serpula lacrymans
Genemark.8452_g
N
0.000
Genemark.8722_g
Serpula lacrymans
Genemark.8722_g
N
0.000
Genemark.8764_g
Serpula lacrymans
Genemark.8764_g
N
0.000
Genemark.8882_g
Serpula lacrymans
Genemark.8882_g
N
0.000
Genemark.9154_g
Serpula lacrymans
Genemark.9154_g
N
0.000
Genemark.920_g
Serpula lacrymans
Genemark.920_g
N
0.000
Genemark.948_g
Serpula lacrymans
Genemark.948_g
N
0.000
Genemark.9611_g
Serpula lacrymans
Genemark.9611_g
N
0.000
Genemark.9644_g
Serpula lacrymans
Genemark.9644_g
N
0.000
Genemark.9654_g
Serpula lacrymans
Genemark.9654_g
N
0.000