CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF3
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000014225
T42346_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.843
BRUNOL6
M178_0.6
Homo sapiens
UGUGDKG
RNAcompete
Ray et al.(2013)
RNCMPT00187
0.814
BRUNOL4
M004_0.6
Homo sapiens
KGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00004
0.744
unc-75
M079_0.6
Caenorhabditis elegans
UGUUGUD
RNAcompete
Ray et al.(2013)
RNCMPT00081
0.735
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000036368
RRM
12
80
LFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGM
ENSTRUP00000036368
RRM
102
168
LNLPNKQQSDEDVRRLFEPFGSIDECTVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGAS
ENSTRUP00000036368
RRM
406
476
IFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
ENSTRUP00000036369
RRM
12
80
LFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGM
ENSTRUP00000036369
RRM
117
179
SKQQSDEDVRRLFEPFGSIDECTVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGAS
ENSTRUP00000036369
RRM
389
459
IFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
ENSTRUP00000036370
RRM
12
80
LFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGM
ENSTRUP00000036370
RRM
100
168
VFLGGRGKQQSDEDVRRLFEPFGSIDECTVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGAS
ENSTRUP00000036370
RRM
374
444
IFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
ENSTRUP00000036371
RRM
12
80
LFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGM
ENSTRUP00000036371
RRM
100
168
VFLGGRGKQQSDEDVRRLFEPFGSIDECTVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGAS
ENSTRUP00000036371
RRM
354
424
IFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
ENSTRUP00000036372
RRM
12
80
LFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGM
ENSTRUP00000036372
RRM
86
128
VQSLPPAPSDSAGGCAFVKFQGHAEAQAAINSLHGSRTMPGAS
ENSTRUP00000036372
RRM
337
359
IFIYHLPQEFSDSELLQMFLPFG
ENSTRUP00000036372
RRM
355
387
FLPFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
ENSTRUP00000036373
RRM
9
77
LFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSALHEQKTLPGM
ENSTRUP00000036373
RRM
107
168
KQQSDEDVRRLFEPFGSIDECTVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGAS
ENSTRUP00000036373
RRM
374
444
IFIYHLPQEFSDSELLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R012775
Ailuropoda melanoleuca
Ame_R012775
N
0.000
ZC3H6
Bos taurus
ENSBTAG00000020646
N
0.000
ZC3H6
Canis familiaris
ENSCAFG00000007160
N
0.000
ZC3H6
Callithrix jacchus
ENSCJAG00000016479
N
0.000
ZC3H6
Dasypus novemcinctus
ENSDNOG00000000253
N
0.000
Zc3h6
Dipodomys ordii
ENSDORG00000013967
N
0.000
ZC3H6
Homo sapiens
ENSG00000188177
N
0.000
ZC3H6
Gorilla gorilla
ENSGGOG00000001665
N
0.000
ZC3H6
Loxodonta africana
ENSLAFG00000001151
N
0.000
ZC3H6
Myotis lucifugus
ENSMLUG00000004896
N
0.000
ZC3H6
Macaca mulatta
ENSMMUG00000016430
N
0.000
ZC3H6
Oryctolagus cuniculus
ENSOCUG00000011125
N
0.000
ZC3H6
Otolemur garnettii
ENSOGAG00000002556
N
0.000
ZC3H6
Ochotona princeps
ENSOPRG00000012717
N
0.000
ZC3H6
Pan troglodytes
ENSPTRG00000012363
N
0.000
ZC3H6
Pteropus vampyrus
ENSPVAG00000013728
N
0.000
ZC3H6
Sus scrofa
ENSSSCG00000008096
N
0.000
ZC3H6
Spermophilus tridecemlineatus
ENSSTOG00000008120
N
0.000
ZC3H6
Tupaia belangeri
ENSTBEG00000016232
N
0.000
ZC3H6
Tarsius syrichta
ENSTSYG00000006672
N
0.000
ZC3H6
Tursiops truncatus
ENSTTRG00000013154
N
0.000
ZC3H6
Vicugna pacos
ENSVPAG00000005912
N
0.000