CELF3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000014225 T42346_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.843
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.814
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.744
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000036368 RRM 12 80
ENSTRUP00000036368 RRM 102 168
ENSTRUP00000036368 RRM 406 476
ENSTRUP00000036369 RRM 12 80
ENSTRUP00000036369 RRM 117 179
ENSTRUP00000036369 RRM 389 459
ENSTRUP00000036370 RRM 12 80
ENSTRUP00000036370 RRM 100 168
ENSTRUP00000036370 RRM 374 444
ENSTRUP00000036371 RRM 12 80
ENSTRUP00000036371 RRM 100 168
ENSTRUP00000036371 RRM 354 424
ENSTRUP00000036372 RRM 12 80
ENSTRUP00000036372 RRM 86 128
ENSTRUP00000036372 RRM 337 359
ENSTRUP00000036372 RRM 355 387
ENSTRUP00000036373 RRM 9 77
ENSTRUP00000036373 RRM 107 168
ENSTRUP00000036373 RRM 374 444

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012775 Ailuropoda melanoleuca Ame_R012775 N 0.000
ZC3H6 Bos taurus ENSBTAG00000020646 N 0.000
ZC3H6 Canis familiaris ENSCAFG00000007160 N 0.000
ZC3H6 Callithrix jacchus ENSCJAG00000016479 N 0.000
ZC3H6 Dasypus novemcinctus ENSDNOG00000000253 N 0.000
Zc3h6 Dipodomys ordii ENSDORG00000013967 N 0.000
ZC3H6 Homo sapiens ENSG00000188177 N 0.000
ZC3H6 Gorilla gorilla ENSGGOG00000001665 N 0.000
ZC3H6 Loxodonta africana ENSLAFG00000001151 N 0.000
ZC3H6 Myotis lucifugus ENSMLUG00000004896 N 0.000
ZC3H6 Macaca mulatta ENSMMUG00000016430 N 0.000
ZC3H6 Oryctolagus cuniculus ENSOCUG00000011125 N 0.000
ZC3H6 Otolemur garnettii ENSOGAG00000002556 N 0.000
ZC3H6 Ochotona princeps ENSOPRG00000012717 N 0.000
ZC3H6 Pan troglodytes ENSPTRG00000012363 N 0.000
ZC3H6 Pteropus vampyrus ENSPVAG00000013728 N 0.000
ZC3H6 Sus scrofa ENSSSCG00000008096 N 0.000
ZC3H6 Spermophilus tridecemlineatus ENSSTOG00000008120 N 0.000
ZC3H6 Tupaia belangeri ENSTBEG00000016232 N 0.000
ZC3H6 Tarsius syrichta ENSTSYG00000006672 N 0.000
ZC3H6 Tursiops truncatus ENSTTRG00000013154 N 0.000
ZC3H6 Vicugna pacos ENSVPAG00000005912 N 0.000