CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ACH69785
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ACH69785
T59672_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.914
BRUNOL6
M178_0.6
Homo sapiens
UGUGDKG
RNAcompete
Ray et al.(2013)
RNCMPT00187
0.819
BRUNOL4
M004_0.6
Homo sapiens
KGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00004
0.768
unc-75
M079_0.6
Caenorhabditis elegans
UGUUGUD
RNAcompete
Ray et al.(2013)
RNCMPT00081
0.763
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACH69785
RRM
48
117
LFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMA
ACH69785
RRM
136
204
LFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHGSQTMPGAS
ACH69785
RRM
401
471
LFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
91 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.924
CELF5
Bos taurus
ENSBTAG00000021774
I
0.735
CELF5
Canis familiaris
ENSCAFG00000019263
I
0.748
CELF6
Cavia porcellus
ENSCPOG00000025842
I
0.000
celf4
Danio rerio
ENSDARG00000070045
I
0.000
celf5
Danio rerio
ENSDARG00000071375
I
0.881
Celf5
Dipodomys ordii
ENSDORG00000005915
I
0.724
CELF5
Equus caballus
ENSECAG00000018055
N
0.000
CELF5
Echinops telfairi
ENSETEG00000016221
I
0.710
CELF3
Homo sapiens
ENSG00000159409
I
0.805
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.914
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.871
CELF5
Loxodonta africana
ENSLAFG00000026387
N
0.000
CELF5
Meleagris gallopavo
ENSMGAG00000001169
I
0.738
CELF3
Microcebus murinus
ENSMICG00000010644
N
0.000
CELF5
Myotis lucifugus
ENSMLUG00000006471
N
0.000
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.705
Celf4
Mus musculus
ENSMUSG00000024268
I
0.867
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.871
CELF5
Otolemur garnettii
ENSOGAG00000014161
I
0.729
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.876
CELF5
Procavia capensis
ENSPCAG00000002170
I
0.716
CELF5
Pan troglodytes
ENSPTRG00000010259
I
0.876
CELF5
Pteropus vampyrus
ENSPVAG00000014619
I
0.743
BRUNOL5
Taeniopygia guttata
ENSTGUG00000000514
I
0.738
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.000
CELF5
Tursiops truncatus
ENSTTRG00000009625
I
0.743
celf5
Xenopus tropicalis
ENSXETG00000014344
I
0.990
celf4
Xenopus tropicalis
ENSXETG00000020486
I
0.867