ACH69785 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ACH69785 T59672_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.914
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.819
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.768
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.763
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ACH69785 RRM 48 117
ACH69785 RRM 136 204
ACH69785 RRM 401 471

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA81375 Xenopus laevis AAA81375 I 0.819
AAH46942 Xenopus laevis AAH46942 I 0.814
AAH57704 Xenopus laevis AAH57704 I 0.819
AAH72134 Xenopus laevis AAH72134 I 0.819
ACH69784 Xenopus laevis ACH69784 I 0.773
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.805
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.824
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.924
Bm1_27610 Brugia malayi Bm1_27610 I 0.776
unc-75 Caenorhabditis elegans C17D12.2 D 0.763
CBG15358 Caenorhabditis briggsae CBG15358 I 0.763
CRE09771 Caenorhabditis remanei CRE09771 I 0.763
CELF6 Bos taurus ENSBTAG00000014092 I 0.824
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.805
CELF5 Bos taurus ENSBTAG00000021774 I 0.735
CELF3 Canis familiaris ENSCAFG00000012794 I 0.805
CELF5 Canis familiaris ENSCAFG00000019263 I 0.748
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.805
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.824
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.773
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.805
CELF3 Danio rerio ENSDARG00000006983 I 0.805
celf3 Danio rerio ENSDARG00000034668 I 0.833
celf5 Danio rerio ENSDARG00000071375 I 0.881
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.767
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.724
CELF3 Equus caballus ENSECAG00000020365 I 0.805
CELF5 Echinops telfairi ENSETEG00000016221 I 0.710
CELF6 Felis catus ENSFCAG00000016249 I 0.824
BRUNOL4 Homo sapiens ENSG00000101489 D 0.773
BRUNOL6 Homo sapiens ENSG00000140488 D 0.819
CELF3 Homo sapiens ENSG00000159409 I 0.805
BRUNOL5 Homo sapiens ENSG00000161082 D 0.914
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.843
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.763
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.843
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.773
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.824
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.805
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.811
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.871
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.805
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.777
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.738
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.805
HEXA Macaca mulatta ENSMMUG00000010687 I 0.824
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.705
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.852
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.805
Celf4 Mus musculus ENSMUSG00000024268 I 0.867
Celf3 Mus musculus ENSMUSG00000028137 I 0.805
Celf6 Mus musculus ENSMUSG00000032297 I 0.829
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.773
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.805
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.719
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.871
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.729
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.771
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.701
CELF3 Oryzias latipes ENSORLG00000002630 I 0.730
CELF5 Oryzias latipes ENSORLG00000004600 I 0.876
CELF4 Oryzias latipes ENSORLG00000008913 I 0.862
CELF3 Oryzias latipes ENSORLG00000010447 I 0.789
CELF3 Procavia capensis ENSPCAG00000001623 I 0.781
CELF5 Procavia capensis ENSPCAG00000002170 I 0.716
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.819
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.777
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.805
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.876
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.810
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.824
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.773
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.743
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.829
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.805
CELF6 Sus scrofa ENSSSCG00000001928 I 0.824
CELF3 Sus scrofa ENSSSCG00000006618 I 0.786
CELF5 Sus scrofa ENSSSCG00000013476 I 0.739
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.738
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.843
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.829
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.843
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.743
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.768
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.990
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.867
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.843
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.814
Q91579 Xenopus laevis Q91579 I 0.819
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.731
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.731