MDP0000138486 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000138486 T57337_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.838
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000138486 RRM 25 91

Links

Other RRM family RBPs
Other Malus x domestica RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.838
ppa019392m Prunus persica ppa019392m I 0.768
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.896
CU179634_3 Medicago truncatula CU179634_3 I 0.896
mgf017214m Mimulus guttatus mgf017214m I 0.882
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.853
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.838
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.754
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.809
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.754
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.866
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.838
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
ppa018926m Prunus persica ppa018926m I 0.768
ppa018603m Prunus persica ppa018603m I 0.768
ppa016222m Prunus persica ppa016222m I 0.779
ppa009964m Prunus persica ppa009964m I 0.956
ppa009716m Prunus persica ppa009716m I 0.809
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
MDP0000233609 Malus x domestica MDP0000233609 I 0.779
MDP0000184420 Malus x domestica MDP0000184420 I 0.794
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.739
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.866
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.794
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.783
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.853
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.710
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.853
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.868
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.768
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.768
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.710
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
PK21213.1 Cannabis sativa PK21213.1 I 0.896
PK15672.1 Cannabis sativa PK15672.1 I 0.812
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.838
PK14266.1 Cannabis sativa PK14266.1 I 0.779
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.868
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.838
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.824
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.809
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.710
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.794
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.779
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.841
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.841
30076.m004440 Ricinus communis 30076.m004440 I 0.809
29908.m006046 Ricinus communis 29908.m006046 I 0.765
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.739
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.754
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.725
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.739
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.725