PABPC1L (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000003739 T41581_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.709
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.709
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000003351 RRM 1 53
ENSSTOP00000003351 RRM 71 139
ENSSTOP00000003351 RRM 163 232
ENSSTOP00000003351 RRM 266 334

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.710
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.706
AAA60936 Xenopus laevis AAA60936 I 0.000
AAH52100 Xenopus laevis AAH52100 I 0.703
AAH71118 Xenopus laevis AAH71118 I 0.753
AAH72110 Xenopus laevis AAH72110 I 0.713
AAH73435 Xenopus laevis AAH73435 I 0.000
AAH80020 Xenopus laevis AAH80020 I 0.753
AAI08463 Xenopus laevis AAI08463 I 0.713
AAK29408 Xenopus laevis AAK29408 I 0.753
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.710
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.867
CAA40721 Xenopus laevis CAA40721 I 0.703
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.000
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.713
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.728
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.731
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.720
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.731
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.713
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.000
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.728
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.000
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.731
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.731
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.731
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.720
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.710
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.713
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.867
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.731
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.731
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.731
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.720
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.720
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.731
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.731
Gm10110 Mus musculus ENSMUSG00000062093 I 0.710
LOC100054235 Equus caballus ENSECAG00000009396 I 0.713
LOC100070836 Equus caballus ENSECAG00000022681 I 0.853
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.713
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.767
P20965 Xenopus laevis P20965 I 0.703
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.728
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.728
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.731
PABPC1 Homo sapiens ENSG00000070756 D 0.731
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.713
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.728
pabpc1a Danio rerio ENSDARG00000017219 I 0.710
pabpc1b Danio rerio ENSDARG00000021140 I 0.711
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.742
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.860
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.853
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.000
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.767
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.728
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.713
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.839
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.835
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.828
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.864
PABPC1L Gallus gallus ENSGALG00000004123 I 0.763
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.810
PABPC1L Homo sapiens ENSG00000101104 I 0.867
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.839
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.842
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.767
pabpc1l Danio rerio ENSDARG00000002597 I 0.717
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.849
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.792
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.853
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.864
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.828
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.867
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.713
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.867
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.867
PABPC1L Bos taurus ENSBTAG00000016849 I 0.878
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.871
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.000
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.703
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.717
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.713
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.705
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.000
PABPC3 Homo sapiens ENSG00000151846 D 0.000
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.706
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.717
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.710
pabpc4 Danio rerio ENSDARG00000059259 I 0.000
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.713
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.706
PABPC4 Homo sapiens ENSG00000090621 D 0.710
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.000
PABPC4 Gallus gallus ENSGALG00000003800 I 0.000
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.713
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.710
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.706
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.710
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.713
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.710
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.000
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.713
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.000
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.713
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.000
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.000
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.000
Q6GR16 Xenopus laevis Q6GR16 I 0.753
Q6IP09 Xenopus laevis Q6IP09 I 0.713
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.000
Q98SP8 Xenopus laevis Q98SP8 I 0.753
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.000
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.717
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.728
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.721