Pabpc1l (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000054582 T39384_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.741
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.741
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.741
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000096701 RRM 13 83
ENSMUSP00000096701 RRM 101 169
ENSMUSP00000096701 RRM 193 262
ENSMUSP00000096701 RRM 296 364

Links

Other RRM family RBPs
Other Mus musculus RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.957
PABPC1L Bos taurus ENSBTAG00000016849 I 0.892
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.889
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.882
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.882
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.882
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.882
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.878
PABPC1L Homo sapiens ENSG00000101104 I 0.878
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.878
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.878
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.875
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.875
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.871
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.867
LOC100070836 Equus caballus ENSECAG00000022681 I 0.867
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.864
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.864
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.853
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.846
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.842
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.835
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.828
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.821
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.792
PABPC1L Gallus gallus ENSGALG00000004123 I 0.789
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.789
AAH80020 Xenopus laevis AAH80020 I 0.781
AAK29408 Xenopus laevis AAK29408 I 0.781
Q98SP8 Xenopus laevis Q98SP8 I 0.781
Q6GR16 Xenopus laevis Q6GR16 I 0.778
AAH71118 Xenopus laevis AAH71118 I 0.778
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.767
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.763
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.760
PABPC1 Homo sapiens ENSG00000070756 D 0.760
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.760
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.760
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.760
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.760
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.760
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.760
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.760
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.760
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.760
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.760
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.756
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.756
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.756
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.756
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.756
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.756
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.753
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.753
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.750
PABPC4 Homo sapiens ENSG00000090621 D 0.749
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.749
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.749
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.749
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.749
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.749
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.749
pabpc1b Danio rerio ENSDARG00000021140 I 0.746
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.746
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.746
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.746
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.746
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.746
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.746
LOC100054235 Equus caballus ENSECAG00000009396 I 0.746
AAI08463 Xenopus laevis AAI08463 I 0.746
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.746
Gm10110 Mus musculus ENSMUSG00000062093 I 0.746
AAH72110 Xenopus laevis AAH72110 I 0.746
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.746
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.746
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.746
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.746
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.746
Q6IP09 Xenopus laevis Q6IP09 I 0.746
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.746
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.746
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.742
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.742
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.742
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.742
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.738
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.738
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.738
AAH52100 Xenopus laevis AAH52100 I 0.735
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.735
P20965 Xenopus laevis P20965 I 0.735
pabpc1l Danio rerio ENSDARG00000002597 I 0.735
CAA40721 Xenopus laevis CAA40721 I 0.735
pabpc1a Danio rerio ENSDARG00000017219 I 0.735
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.735
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.731
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.731
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.731
AAA60936 Xenopus laevis AAA60936 I 0.731
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.731
PABPC4 Gallus gallus ENSGALG00000003800 I 0.728
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.728
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.728
AAH73435 Xenopus laevis AAH73435 I 0.728
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.724
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.724
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.721
pabpc4 Danio rerio ENSDARG00000059259 I 0.720
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.719
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.718
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.713
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.713
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.713
PABPC3 Homo sapiens ENSG00000151846 D 0.713
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.706
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.706
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.706