PABPC1L (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000005978 T36779_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.770
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.770
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.770
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.766
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000005458 RRM 13 83
ENSEEUP00000005458 RRM 101 169
ENSEEUP00000005458 RRM 193 262
ENSEEUP00000005458 RRM 296 364

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.935
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.932
PABPC1L Bos taurus ENSBTAG00000016849 I 0.928
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.925
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.921
PABPC1L Homo sapiens ENSG00000101104 I 0.921
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.921
LOC100070836 Equus caballus ENSECAG00000022681 I 0.921
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.921
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.918
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.918
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.914
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.910
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.907
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.907
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.900
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.892
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.889
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.882
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.871
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.871
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.857
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.857
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.839
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.824
PABPC1L Gallus gallus ENSGALG00000004123 I 0.824
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.817
AAK29408 Xenopus laevis AAK29408 I 0.799
Q6GR16 Xenopus laevis Q6GR16 I 0.799
AAH80020 Xenopus laevis AAH80020 I 0.799
Q98SP8 Xenopus laevis Q98SP8 I 0.799
AAH71118 Xenopus laevis AAH71118 I 0.799
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.789
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.789
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.789
PABPC1 Homo sapiens ENSG00000070756 D 0.789
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.789
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.789
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.789
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.789
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.789
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.789
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.789
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.789
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.789
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.785
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.785
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.785
LOC100054235 Equus caballus ENSECAG00000009396 I 0.785
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.785
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.785
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.785
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.785
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.785
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.785
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.785
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.785
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.785
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.785
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.785
Gm10110 Mus musculus ENSMUSG00000062093 I 0.785
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.785
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.785
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.785
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.785
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.785
PABPC4 Homo sapiens ENSG00000090621 D 0.785
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.781
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.781
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.781
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.781
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.781
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.781
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.779
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.778
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.778
Q6IP09 Xenopus laevis Q6IP09 I 0.778
AAI08463 Xenopus laevis AAI08463 I 0.778
AAH72110 Xenopus laevis AAH72110 I 0.778
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.774
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.774
pabpc1l Danio rerio ENSDARG00000002597 I 0.774
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.774
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.771
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.771
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.771
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.771
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.767
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.767
PABPC4 Gallus gallus ENSGALG00000003800 I 0.767
AAH73435 Xenopus laevis AAH73435 I 0.767
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.767
pabpc1b Danio rerio ENSDARG00000021140 I 0.764
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.763
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.763
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.763
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.763
pabpc1a Danio rerio ENSDARG00000017219 I 0.763
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.760
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.760
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.760
P20965 Xenopus laevis P20965 I 0.760
CAA40721 Xenopus laevis CAA40721 I 0.760
pabpc4 Danio rerio ENSDARG00000059259 I 0.760
AAH52100 Xenopus laevis AAH52100 I 0.760
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.757
AAA60936 Xenopus laevis AAA60936 I 0.756
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.756
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.753
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.753
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.753
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.751
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.749
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.746
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.746
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.742
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.742
PABPC3 Homo sapiens ENSG00000151846 D 0.735
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.728
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.724
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.713
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.713
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.707