PABPC1L (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000013633 T35859_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.770
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.770
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.770
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.741
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000012273 RRM 13 83
ENSCPOP00000012273 RRM 101 169
ENSCPOP00000012273 RRM 193 262
ENSCPOP00000012273 RRM 296 364

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.921
PABPC1L Homo sapiens ENSG00000101104 I 0.918
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.918
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.918
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.914
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.914
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.914
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.910
PABPC1L Bos taurus ENSBTAG00000016849 I 0.910
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.907
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.907
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.903
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.903
LOC100070836 Equus caballus ENSECAG00000022681 I 0.900
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.896
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.885
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.882
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.875
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.875
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.875
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.857
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.853
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.849
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.839
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.821
PABPC1L Gallus gallus ENSGALG00000004123 I 0.817
Q6GR16 Xenopus laevis Q6GR16 I 0.814
AAH71118 Xenopus laevis AAH71118 I 0.814
Q98SP8 Xenopus laevis Q98SP8 I 0.810
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.810
AAH80020 Xenopus laevis AAH80020 I 0.810
AAK29408 Xenopus laevis AAK29408 I 0.810
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.792
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.792
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.789
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.789
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.789
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.789
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.789
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.789
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.789
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.789
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.789
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.789
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.789
PABPC1 Homo sapiens ENSG00000070756 D 0.789
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.785
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.785
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.785
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.785
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.785
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.785
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.779
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.774
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.771
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.771
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.771
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.767
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.767
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.767
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.767
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.767
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.767
LOC100054235 Equus caballus ENSECAG00000009396 I 0.763
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.763
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.763
Q6IP09 Xenopus laevis Q6IP09 I 0.763
AAI08463 Xenopus laevis AAI08463 I 0.763
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.763
AAH72110 Xenopus laevis AAH72110 I 0.763
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.763
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.763
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.763
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.763
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.763
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.763
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.763
pabpc1a Danio rerio ENSDARG00000017219 I 0.763
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.763
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.763
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.760
PABPC4 Homo sapiens ENSG00000090621 D 0.760
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.760
AAH73435 Xenopus laevis AAH73435 I 0.760
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.760
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.760
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.760
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.760
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.760
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.760
Gm10110 Mus musculus ENSMUSG00000062093 I 0.760
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.760
pabpc1l Danio rerio ENSDARG00000002597 I 0.760
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.760
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.760
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.756
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.756
PABPC4 Gallus gallus ENSGALG00000003800 I 0.756
pabpc1b Danio rerio ENSDARG00000021140 I 0.754
P20965 Xenopus laevis P20965 I 0.753
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.753
pabpc4 Danio rerio ENSDARG00000059259 I 0.753
AAH52100 Xenopus laevis AAH52100 I 0.753
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.753
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.753
CAA40721 Xenopus laevis CAA40721 I 0.753
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.750
AAA60936 Xenopus laevis AAA60936 I 0.749
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.749
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.746
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.746
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.742
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.740
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.738
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.738
PABPC3 Homo sapiens ENSG00000151846 D 0.738
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.735
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.731
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.717
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.710