estExt_fgenesh1_pg.C_1580052 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_1580052 T50506_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_1580052 RRM 21 88

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

147 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.956
AAEL005909 Aedes aegypti AAEL005909 N 0.897
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.912
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.838
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.912
AGAP002780 Anopheles gambiae AGAP002780 N 0.882
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.926
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.768
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.768
32497 Aureococcus anophagefferens 32497 N 0.770
EDO06533.1 Babesia bovis EDO06533.1 N 0.794
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.797
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.912
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.794
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.897
CBN08400 Caenorhabditis brenneri CBN08400 N 0.794
CBG06987 Caenorhabditis briggsae CBG06987 N 0.794
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.794
CJA01433 Caenorhabditis japonica CJA01433 N 0.824
CRE22109 Caenorhabditis remanei CRE22109 N 0.794
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.912
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.912
PK21780.1 Cannabis sativa PK21780.1 N 0.779
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.868
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.912
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.706
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.735
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.721
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.809
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.912
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.897
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.897
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.721
CMU_001200 Cryptosporidium muris CMU_001200 N 0.750
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.768
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.897
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.897
sf3b14 Danio rerio ENSDARG00000009753 N 0.912
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.884
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.912
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.735
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.912
GF10910 Drosophila ananassae FBgn0087950 N 0.855
GG14070 Drosophila erecta FBgn0106332 N 0.855
GH16287 Drosophila grimshawi FBgn0123758 N 0.855
CG13298 Drosophila melanogaster FBgn0035692 N 0.855
GI13232 Drosophila mojavensis FBgn0135989 N 0.855
GL22529 Drosophila persimilis FBgn0160121 N 0.855
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.855
GM13852 Drosophila sechellia FBgn0168783 N 0.855
GD13137 Drosophila simulans FBgn0184859 N 0.855
GJ12004 Drosophila virilis FBgn0199256 N 0.855
GK17258 Drosophila willistoni FBgn0219257 N 0.855
GE20495 Drosophila yakuba FBgn0068445 N 0.855
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.884
LOC100056247 Equus caballus ENSECAG00000015618 N 0.912
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.912
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.754
SF3B14 Gallus gallus ENSGALG00000016501 N 0.912
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.882
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.783
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.779
68671 Helobdella robusta 68671 N 0.868
AC008073.5 Homo sapiens ENSG00000115128 N 0.912
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.853
ISCW024082 Ixodes scapularis ISCW024082 N 0.897
LOAG_04189 Loa loa LOAG_04189 N 0.812
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.897
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.783
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.912
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.912
MDP0000185506 Malus x domestica MDP0000185506 N 0.779
MDP0000916880 Malus x domestica MDP0000916880 N 0.735
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.779
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.783
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.912
Minc01156 Meloidogyne incognita Minc01156 N 0.868
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.721
mgf016428m Mimulus guttatus mgf016428m N 0.783
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.882
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.754
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.912
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.912
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.926
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.926
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.710
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.765
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.912
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.912
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.838
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.838
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.897
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.912
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.765
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.779
PHUM617060 Pediculus humanus PHUM617060 N 0.926
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.797
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.768
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.794
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.826
PITG_10282 Phytophthora infestans PITG_10282 N 0.826
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.797
s_454910 Phytophthora sojae s_454910 N 0.826
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.783
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.797
PFL1200c Plasmodium falciparum PFL1200c N 0.779
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.779
PVX_123875 Plasmodium vivax PVX_123875 N 0.779
PY07239 Plasmodium yoelii PY07239 N 0.765
EFA75115.1 Polysphondylium pallidum EFA75115.1 N 0.706
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.912
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.765
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.779
PPA24922 Pristionchus pacificus PPA24922 N 0.824
ppa013405m Prunus persica ppa013405m N 0.779
ppa013407m Prunus persica ppa013407m N 0.779
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.912
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.754
29868.m000351 Ricinus communis 29868.m000351 N 0.779
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.853
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.824
Smp_032060 Schistosoma mansoni Smp_032060 N 0.824
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.809
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.912
SB01G003790 Sorghum bicolor Sb01g003790 N 0.824
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.739
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.912
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.912
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.897
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.912
160.m00066 Tetrahymena thermophila 160.m00066 N 0.710
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.897
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.783
TA13725 Theileria annulata TA13725 N 0.809
TP02_0539 Theileria parva TP02_0539 N 0.765
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.926
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.855
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.912
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.912
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.912
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.779
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.750
AAH57709 Xenopus laevis AAH57709 N 0.882
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.897
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.824
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.824