XP_801795.2 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_801795.2 T59298_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.736
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.736
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.736
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_801795.2 RRM 13 83
XP_801795.2 RRM 101 170
XP_801795.2 RRM 194 262
XP_801795.2 RRM 296 365

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.734
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.702
AAEL010318 Aedes aegypti AAEL010318 I 0.726
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.715
Aqu1.221418 Amphimedon queenslandica Aqu1.221418 N 0.701
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.739
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.701
AGAP011092 Anopheles gambiae AGAP011092 I 0.726
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.755
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.755
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.755
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.741
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.736
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.706
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.706
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.725
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.736
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.736
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.736
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.736
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.738
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.736
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.715
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.715
pabpc4 Danio rerio ENSDARG00000059259 I 0.722
pabpc1b Danio rerio ENSDARG00000021140 I 0.730
pabpc1a Danio rerio ENSDARG00000017219 I 0.732
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.733
GF12652 Drosophila ananassae FBgn0089688 I 0.709
GG21846 Drosophila erecta FBgn0114024 I 0.709
GH21052 Drosophila grimshawi FBgn0128514 I 0.730
GI18654 Drosophila mojavensis FBgn0141393 I 0.734
GL11548 Drosophila persimilis FBgn0149157 I 0.716
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.716
GD11341 Drosophila simulans FBgn0183090 I 0.702
GJ21671 Drosophila virilis FBgn0208790 I 0.727
GK19652 Drosophila willistoni FBgn0221650 I 0.716
GE11925 Drosophila yakuba FBgn0229707 I 0.706
LOC100054235 Equus caballus ENSECAG00000009396 I 0.736
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.725
PABPC4 Gallus gallus ENSGALG00000003800 I 0.725
PABPC1L Gallus gallus ENSGALG00000004123 I 0.704
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.739
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.718
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.718
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.736
PABPC1 Homo sapiens ENSG00000070756 D 0.736
PABPC4 Homo sapiens ENSG00000090621 D 0.736
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.701
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.701
ISCW014211 Ixodes scapularis ISCW014211 I 0.747
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.715
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.733
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.736
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.736
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.736
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.736
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.708
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.711
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.736
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.736
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.701
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.723
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.736
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.739
Gm10110 Mus musculus ENSMUSG00000062093 I 0.739
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.727
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.727
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.727
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.722
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.736
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.732
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.725
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.739
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.736
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.736
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.732
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.743
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.701
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.722
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.736
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.732
PHUM617090 Pediculus humanus PHUM617090 I 0.741
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.736
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.736
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.736
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.715
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.739
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.739
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 1.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.736
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.736
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.739
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.729
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.718
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.739
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.722
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.715
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.710
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.722
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.722
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.736
P20965 Xenopus laevis P20965 I 0.729
CAA40721 Xenopus laevis CAA40721 I 0.729
AAI08463 Xenopus laevis AAI08463 I 0.725
AAH73435 Xenopus laevis AAH73435 I 0.729
AAH72110 Xenopus laevis AAH72110 I 0.725
AAH52100 Xenopus laevis AAH52100 I 0.729
AAA60936 Xenopus laevis AAA60936 I 0.725
Q6IP09 Xenopus laevis Q6IP09 I 0.725
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.736