fgenesh1_pg.C_scaffold_40000002 (Phanerochaete chrysosporium)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_40000002 T13948_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_40000002 CCHC ZF 401 418

Links

Other CCHC ZF family RBPs
Other Phanerochaete chrysosporium RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.000
29726.m004014 Ricinus communis 29726.m004014 N 0.000
30128.m009030 Ricinus communis 30128.m009030 N 0.000
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.000
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.000
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.000
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.000
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.000
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.000
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.000
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.000
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.000
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.000
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.000
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.000
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.000
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.000
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.000
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.000
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.000
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.000
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.000
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.000
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.000
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.000
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.000
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.000
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.000
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.000
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.000
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.000
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.000
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.000
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.000
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.000
MDP0000178517 Malus x domestica MDP0000178517 N 0.000
MDP0000207283 Malus x domestica MDP0000207283 N 0.000
MDP0000319251 Malus x domestica MDP0000319251 N 0.000
MDP0000535412 Malus x domestica MDP0000535412 N 0.000
MDP0000577111 Malus x domestica MDP0000577111 N 0.000
MDP0000665604 Malus x domestica MDP0000665604 N 0.000
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.000
mgf002685m Mimulus guttatus mgf002685m N 0.000
mgf007299m Mimulus guttatus mgf007299m N 0.000
PK23881.1 Cannabis sativa PK23881.1 N 0.000
PK29685.1 Cannabis sativa PK29685.1 N 0.000
ppa005056m Prunus persica ppa005056m N 0.000
ppa005229m Prunus persica ppa005229m N 0.000
ppa005813m Prunus persica ppa005813m N 0.000
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.000
SB05G013190 Sorghum bicolor Sb05g013190 N 0.000
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.000