CELF4 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000008913 T40163_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.867
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.834
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.829
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000011182 RRM 1 33
ENSORLP00000011182 RRM 52 120
ENSORLP00000011182 RRM 360 403
ENSORLP00000011184 RRM 53 122
ENSORLP00000011184 RRM 141 209
ENSORLP00000011184 RRM 443 513

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExtDG_fgenesh_newKGs_kg.C_110065 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_110065 N 0.000
estExt_Genewise1.C_30147 Volvox carteri estExt_Genewise1.C_30147 N 0.000
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.000
fgenesh1_pg.C_scaffold_23000018 Phytophthora capsici fgenesh1_pg.C_scaffold_23000018 N 0.000
GSPATP00035306001 Paramecium tetraurelia GSPATP00035306001 N 0.000
PITG_12876 Phytophthora infestans PITG_12876 N 0.000
s_467614 Phytophthora sojae s_467614 N 0.000