CELF4 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000008913 T40163_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.867
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.834
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.829
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000011182 RRM 1 33
ENSORLP00000011182 RRM 52 120
ENSORLP00000011182 RRM 360 403
ENSORLP00000011184 RRM 53 122
ENSORLP00000011184 RRM 141 209
ENSORLP00000011184 RRM 443 513

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRUNOL4 Homo sapiens ENSG00000101489 D 0.839
BRUNOL6 Homo sapiens ENSG00000140488 D 0.829
CELF6 Bos taurus ENSBTAG00000014092 I 0.829
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.763
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.824
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.844
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.819
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.829
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.839
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.833
CELF6 Sus scrofa ENSSSCG00000001928 I 0.829
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.971
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.834
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.829
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.815
Celf6 Mus musculus ENSMUSG00000032297 I 0.833
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.829
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.839
CELF6 Felis catus ENSFCAG00000016249 I 0.829
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.857
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.839
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.829
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.811
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.000
HEXA Macaca mulatta ENSMMUG00000010687 I 0.829
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.890
Celf4 Mus musculus ENSMUSG00000024268 I 0.948
ACH69784 Xenopus laevis ACH69784 I 0.848