GSVIVG00031780001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00031780001 T44762_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00031780001 RRM 11 80
GSVIVT00031780001 RRM 104 175
GSVIVT00031780001 RRM 223 287

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005940m Prunus persica ppa005940m I 0.731
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.797
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.792
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.705
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.710
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.792
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.700
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.710
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.700
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.821
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.744
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.787
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.816
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.726
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.797
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.712
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.797
mgf000380m Mimulus guttatus mgf000380m I 0.797
mgf010468m Mimulus guttatus mgf010468m I 0.702
ppa005903m Prunus persica ppa005903m I 0.812
ppa005661m Prunus persica ppa005661m I 0.812
MDP0000276227 Malus x domestica MDP0000276227 I 0.716
MDP0000200455 Malus x domestica MDP0000200455 I 0.807
ppa006577m Prunus persica ppa006577m I 0.707
MDP0000136330 Malus x domestica MDP0000136330 I 0.807
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.797
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.787
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.768
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.768
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.739
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.739
mgf023806m Mimulus guttatus mgf023806m I 0.707
mgf012795m Mimulus guttatus mgf012795m I 0.739
mgf011075m Mimulus guttatus mgf011075m I 0.792
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.778
PK00840.1 Cannabis sativa PK00840.1 I 0.803
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.787
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.812
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.726
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.826
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.787
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.739
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.726
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.773
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.787
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.797
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.773
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.792
PK28027.1 Cannabis sativa PK28027.1 I 0.716
PK15272.1 Cannabis sativa PK15272.1 I 0.792
SB01G045570 Sorghum bicolor Sb01g045570 I 0.707
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.749
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.721
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.721
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.715
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.721
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.721
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.721
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.792
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.721
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.710
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.779
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.812
30170.m014217 Ricinus communis 30170.m014217 I 0.787
29801.m003218 Ricinus communis 29801.m003218 I 0.797
30169.m006434 Ricinus communis 30169.m006434 I 0.731
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.705
MDP0000614064 Malus x domestica MDP0000614064 N 0.702
MDP0000262005 Malus x domestica MDP0000262005 N 0.734
MDP0000223369 Malus x domestica MDP0000223369 N 0.702
MDP0000142206 Malus x domestica MDP0000142206 N 0.725
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.739
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.719
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.720
mgf013285m Mimulus guttatus mgf013285m N 0.739
MDP0000176892 Malus x domestica MDP0000176892 N 0.763