PCBP3 (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000013604 T19659_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.979
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.872
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.872
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.851
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000034760 KH 10 70
ENSTRUP00000034760 KH 94 157
ENSTRUP00000034760 KH 256 318
ENSTRUP00000034761 KH 1 56
ENSTRUP00000034761 KH 80 143
ENSTRUP00000034761 KH 229 291
ENSTRUP00000034762 KH 10 70
ENSTRUP00000034762 KH 94 157
ENSTRUP00000034762 KH 283 345
ENSTRUP00000034763 KH 17 77
ENSTRUP00000034763 KH 101 164
ENSTRUP00000034763 KH 287 349
ENSTRUP00000034764 KH 19 79
ENSTRUP00000034764 KH 103 166
ENSTRUP00000034764 KH 248 310
ENSTRUP00000034765 KH 6 66
ENSTRUP00000034765 KH 90 153
ENSTRUP00000034765 KH 261 323
ENSTRUP00000034766 KH 17 77
ENSTRUP00000034766 KH 101 164

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.732
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.846
AAH41241 Xenopus laevis AAH41241 I 0.867
AAH74333 Xenopus laevis AAH74333 N 0.976
AAH84195 Xenopus laevis AAH84195 I 0.867
AAI33216 Xenopus laevis AAI33216 N 0.968
amel4_ncbi_hmm16330 Apis mellifera amel4_ncbi_hmm16330 I 0.717
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.851
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.913
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.792
CAB50743 Xenopus laevis CAB50743 I 0.867
CAD29864 Xenopus laevis CAD29864 I 0.867
CBG15694 Caenorhabditis briggsae CBG15694 N 0.712
CBN14493 Caenorhabditis brenneri CBN14493 N 0.712
CRE26806 Caenorhabditis remanei CRE26806 N 0.712
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.767
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.872
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.936
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.867
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.872
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.779
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.851
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.851
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.872
ENSMGAG00000003191 Meleagris gallopavo ENSMGAG00000003191 N 0.824
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.898
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.872
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.800
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.704
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.872
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.856
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.846
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.835
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.872
ENSPPYG00000011525 Pongo pygmaeus ENSPPYG00000011525 N 0.904
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.851
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.732
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.762
ENSTNIG00000003546 Tetraodon nigroviridis ENSTNIG00000003546 N 0.808
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.851
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.840
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.872
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.767
fgenesh1_pm.C_scaffold_76000004 Capitella teleta fgenesh1_pm.C_scaffold_76000004 I 0.730
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.767
ISCW016289 Ixodes scapularis ISCW016289 I 0.707
LOC100050101 Equus caballus ENSECAG00000012413 I 0.979
LOC100050579 Equus caballus ENSECAG00000002544 I 0.851
LOC100060660 Equus caballus ENSECAG00000024218 I 0.732
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.862
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.979
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.814
LOC426023 Gallus gallus ENSGALG00000013313 N 0.888
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.724
PASA_GEN_0700132 Daphnia pulex PASA_GEN_0700132 I 0.719
pcbp1 Xenopus tropicalis ENSXETG00000011483 N 0.856
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.851
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.851
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.851
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.824
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.846
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.702
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.851
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.851
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.851
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.824
PCBP1 Homo sapiens ENSG00000169564 D 0.851
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.851
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.851
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.872
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.872
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.872
PCBP2 Equus caballus ENSECAG00000022389 I 0.872
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.716
PCBP2 Erinaceus europaeus ENSEEUG00000001077 N 0.888
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.872
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.789
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.872
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.872
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.872
PCBP2 Homo sapiens ENSG00000197111 D 0.872
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.872
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.787
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.739
pcbp2 Danio rerio ENSDARG00000013184 D 0.872
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.872
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.872
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.872
PCBP2 Vicugna pacos ENSVPAG00000000406 N 0.888
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.847
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.872
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.979
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.798
PCBP3 Tarsius syrichta ENSTSYG00000005254 N 0.840
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.795
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 1.000
PCBP3 Spermophilus tridecemlineatus ENSSTOG00000007178 N 0.824
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.989
PCBP3 Canis familiaris ENSCAFG00000011907 N 0.976
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.979
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.867
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.979
PCBP3 Sorex araneus ENSSARG00000007629 N 0.712
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.979
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.927
PCBP3 Ornithorhynchus anatinus ENSOANG00000006265 N 0.976
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.979
Pcbp3 Dipodomys ordii ENSDORG00000003640 N 0.976
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.979
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.979
pcbp3 Danio rerio ENSDARG00000054378 I 0.992
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.979
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.995
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.863
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.907
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.979
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.931
PCBP3 Procavia capensis ENSPCAG00000001454 I 0.750
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.979
PCBP3 Felis catus ENSFCAG00000014812 I 0.863
PCBP3 Gallus gallus ENSGALG00000013155 I 0.941
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.952
PCBP3 Echinops telfairi ENSETEG00000015988 I 0.766
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.902
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.913
PCBP3 Homo sapiens ENSG00000183570 I 0.979
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.979
PCBP3 Gallus gallus ENSGALG00000004394 I 0.941
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.941
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.767
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.732
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.758
PCBP4 Homo sapiens ENSG00000090097 I 0.792
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.732
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.732
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.714
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.732
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.732
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.732
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.742
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.742
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.732
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.719
PCBP4 Danio rerio ENSDARG00000024276 N 0.824
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.737
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.757
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.800
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.732
PHUM522820 Pediculus humanus PHUM522820 N 0.800
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.968
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.872
zgc:110045 Danio rerio ENSDARG00000057141 N 0.880