HNRNPA3 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000004477 T37423_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.817
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.817
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.817
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.796
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000005926 RRM 15 84
ENSGACP00000005926 RRM 106 177
ENSGACP00000005934 RRM 15 84
ENSGACP00000005934 RRM 106 177
ENSGACP00000005955 RRM 15 84
ENSGACP00000005955 RRM 106 177
ENSGACP00000005968 RRM 16 85
ENSGACP00000005968 RRM 107 178
ENSGACP00000005973 RRM 15 84
ENSGACP00000005973 RRM 106 177
ENSGACP00000005983 RRM 1 40
ENSGACP00000005983 RRM 62 133
ENSGACP00000005996 RRM 15 84
ENSGACP00000005996 RRM 106 177

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

203 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.789
AAA49742 Xenopus laevis AAA49742 I 0.789
AAA49949 Xenopus laevis AAA49949 I 0.789
AAA49950 Xenopus laevis AAA49950 I 0.803
AAH45260 Xenopus laevis AAH45260 I 0.796
AAH72090 Xenopus laevis AAH72090 I 0.803
AAI69881 Xenopus laevis AAI69881 I 0.803
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.817
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.728
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.727
CBF67555 Xenopus laevis CBF67555 I 0.789
CBF67578 Xenopus laevis CBF67578 I 0.803
CBF67672 Xenopus laevis CBF67672 I 0.803
CBU92428 Xenopus laevis CBU92428 I 0.789
CBU92451 Xenopus laevis CBU92451 I 0.803
CBU92546 Xenopus laevis CBU92546 I 0.803
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.762
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.775
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.727
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.789
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.768
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.782
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.748
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.810
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.727
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.708
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.722
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.701
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.720
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.715
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.775
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.713
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.731
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.810
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.757
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.797
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.713
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.736
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.708
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.722
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.731
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.722
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.734
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.741
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.708
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.743
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.720
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.776
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.725
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.727
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.748
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.768
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.762
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.741
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.817
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.734
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.789
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.775
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.718
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.817
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.748
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.797
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.796
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.817
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.727
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.768
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.803
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.727
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.817
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.817
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.789
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.725
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.803
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.732
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.720
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.713
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.803
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.810
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.768
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.803
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.817
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.736
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.803
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.797
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.748
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.706
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.741
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.708
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.796
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.810
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.817
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.803
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.803
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.810
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.769
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.803
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.817
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.810
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.817
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.817
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.803
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.810
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.817
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.704
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.769
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.748
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.711
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.782
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.725
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.817
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.782
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.741
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.754
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.741
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.732
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.764
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.782
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.754
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.817
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.720
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.727
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.727
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.817
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.755
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.769
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.810
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.817
Gm8991 Mus musculus ENSMUSG00000059179 I 0.803
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.817
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.803
HNRNPA1 Homo sapiens ENSG00000135486 D 0.817
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.754
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.817
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.817
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.732
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.817
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.796
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.797
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.810
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.727
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.797
HNRNPA3 Homo sapiens ENSG00000170144 I 0.797
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.796
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.797
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.739
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.859
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.797
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.797
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.873
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.810
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.725
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.797
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.797
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.790
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.797
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.923
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.797
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.803
HNRNPA3 Callithrix jacchus ENSCJAG00000032542 N 0.714
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.797
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.796
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.797
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.810
LOC100054206 Equus caballus ENSECAG00000006699 I 0.729
LOC100066794 Equus caballus ENSECAG00000023237 I 0.796
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.797
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.810
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.817
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.762
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.796
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.796
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.797
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.796
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.796
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.817
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.810
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.817
LOC781499 Bos taurus ENSBTAG00000021580 I 0.797
LOC785445 Bos taurus ENSBTAG00000025621 I 0.769
P17130 Xenopus laevis P17130 I 0.789
P51968 Xenopus laevis P51968 I 0.789
P51992 Xenopus laevis P51992 I 0.803
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.866
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.817
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.817
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.817
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.796
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.817
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.817
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.817
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.797
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.708
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.817
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.701
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.782
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.782
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.768
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.734
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.706
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.708
zgc:66127 Danio rerio ENSDARG00000011020 I 0.739